LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g04374	ATGTCTCCTTCAAAAATCCCCGTCGCCGGTGAAATACCATTTTCCGGCATGTGGTTGGTTATTCTTCTTCTTCACCTCGCTCTCTTTGCGACTCCTTCACTTTGCTTGGACTTCCTATTCAACTCCTTCACCGGCATAACCAACCTCACTCTGGTGAAAGACGCTCGCGTGGACTCATCGGTGATCCGCATGACCAACGACTCCAACCAGTACTCTTACGGCCGCGCCTTCTATCCCACAAAAGTTCCCATCACAAAAACTTCTTCCAATTCCTCATCCTCATCCATCACTTCATTCTCAACCTCTTTTGTTTTCTCTGTCTTGCCGCAAATCCCTACCAGTCCCGGCTTTGGCCTCGCCTTCGTCCTCTGCAACACCACCGACCCTCCCGGAGCCATCGCCAGCCAGTACTTCGGCCTATTCACCAACGCCACCTCCCCCACCTTTTTCCCCCTTGTCGCCGTCGAATTCGATACCGGCCAGAACCCTGAATTCAACGACATCGACGACAACCACATCGGCATCGACCTCAACAACATCGAATCCACCTTCTACACCCCTGCCGGCTACTACAATTCCACCGAGGGGTTCGTGCCGGTGCGCATGCGAACCGGCCAGAATATCCGAGCCTGGATCGATTTTGACGGCCAGAATCTGCTGTTCAACGTAACGGTGGCGCCAATCGGCGTTTCGCGCCCGTCCAAGCCTACACTTTCACATTTTGTTCCTACCATAGGTAACTACGTGTCAGCTGACATGTACGTCGGGTTTTCCGCTTCCAAAACGAACTGGATCGAGGCGCAGAGGGTTCTGGCATGGAGCTTCAGCGATTCAGGGCCAGCGAGGGAGCTGAACACGACAAACTTACCGGTGTTCGAACCGGAATCGTCGTCTTCCTCGCTTTCTGGCGGCGCAATTGCAGGGATTGTTGTTGGTTGTGTAGTTTTTGTGGTTATATGCGGTTGTGGTGTTTACTTATGGTGGCGAATCCAGAAAGGGAAAGATGAAGAAGACGAGGAGATCGAGGATTGGGAGTTAGAGTACTGGCCACATAGATTCTCGTACGAGGAATTGAGTTCTGCAACAGGGGAATTTGGGAAGGAGCAGCTGTTAGGTTCGGGAGGGTTCGGGAGAGTGTACAAAGGGACGTTGCCGAACAAAACACATATGGCGGTGAAGTGTGTGAACCACGATTCGAAGCAAGGGCTGCGGGAATTCATGGCGGAGATATCGAGTATGGGGAGGCTTCAGCACAAGAACTTGGTTCAAATGCGAGGGTGGTGTAGAAAGGGTAACGAGCTTATGCTTGTTTATGATTACATGCCTAATGGGAGTCTGAACAGGTGGGTTTTCGATCGCCCCGAGAAGCTTCTAGGGTGGGAGCAACGCCGTCGAATCCTTGTCGACGTGGCAGAGGGGCTTAACTACCTTCACCACGGTTGGGACCAGGTCGTTATTCACCGAGATATTAAGTCCAGTAACATATTGTTGGACGCCGACATGCGAGGGAGACTCGGGGACTTTGGTTTGGCCAAGCTTTACACGCACGGGGAGGTTCCCAACACTACACGTGTGGTGGGAACGTTGGGCTACTTGGCGCCAGAGCTGGCCACGGTTGCGGCGCCGACGTCCGCGAGTGACGTCTACAGCTTTGGGGTGGTGCTGTTGGAGGTGGCGTGCGGGAGGCGGCCCATTGAGACTTCGGTGGCGGAGGAGGAGGTGGTGCTCATTGATTGGGTGAGGGAGTTGTACGCGAAGGGGTGCGCGCGTGAGGCTGCCGATGCGAGGATCCAAGGGGAGTACGATGAGGAAGAAATGGAGATGGTTTTGAAGCTTGGCTTGGCTTGTTGCCACCCTGACCCCCAGAGAAGACCCACCATGAAGGAAGTCGTCGCGCTTCTCCTCGGAGAGAATCCGCCTGAGGCGCCCGGAAAAGTCTTGTCCGATTTGGTTCGCAGCGGCGACGATTTCGATGAGGCGGCGCCTTTGCAACCCTCTTCCACGCGGGTTTGA	2013	0.544	MSPSKIPVAGEIPFSGMWLVILLLHLALFATPSLCLDFLFNSFTGITNLTLVKDARVDSSVIRMTNDSNQYSYGRAFYPTKVPITKTSSNSSSSSITSFSTSFVFSVLPQIPTSPGFGLAFVLCNTTDPPGAIASQYFGLFTNATSPTFFPLVAVEFDTGQNPEFNDIDDNHIGIDLNNIESTFYTPAGYYNSTEGFVPVRMRTGQNIRAWIDFDGQNLLFNVTVAPIGVSRPSKPTLSHFVPTIGNYVSADMYVGFSASKTNWIEAQRVLAWSFSDSGPARELNTTNLPVFEPESSSSSLSGGAIAGIVVGCVVFVVICGCGVYLWWRIQKGKDEEDEEIEDWELEYWPHRFSYEELSSATGEFGKEQLLGSGGFGRVYKGTLPNKTHMAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDYMPNGSLNRWVFDRPEKLLGWEQRRRILVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDADMRGRLGDFGLAKLYTHGEVPNTTRVVGTLGYLAPELATVAAPTSASDVYSFGVVLLEVACGRRPIETSVAEEEVVLIDWVRELYAKGCAREAADARIQGEYDEEEMEMVLKLGLACCHPDPQRRPTMKEVVALLLGENPPEAPGKVLSDLVRSGDDFDEAAPLQPSSTRV	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g04374	670	Gene3D	Phosphorylase Kinase; domain 1	350	440	-	-
	Viun3g04374	670	Pfam	Legume lectin domain	36	289	IPR001220	GO:0030246
	Viun3g04374	670	PANTHER	-	53	638	-	-
	Viun3g04374	670	SUPERFAMILY	Protein kinase-like (PK-like)	343	634	IPR011009	-
	Viun3g04374	670	CDD	STKc_IRAK	371	634	-	-
	Viun3g04374	670	FunFam	L-type lectin-domain containing receptor kinase S.4	34	283	-	-
	Viun3g04374	670	Gene3D	-	35	293	-	-
	Viun3g04374	670	SMART	serkin_6	365	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g04374	670	FunFam	L-type lectin-domain containing receptor kinase S.1	350	440	-	-
	Viun3g04374	670	Gene3D	Transferase(Phosphotransferase) domain 1	441	642	-	-
	Viun3g04374	670	ProSitePatterns	Legume lectins beta-chain signature.	153	159	IPR019825	-
	Viun3g04374	670	FunFam	L-type lectin-domain containing receptor kinase S.4	441	645	-	-
	Viun3g04374	670	SUPERFAMILY	Concanavalin A-like lectins/glucanases	35	292	IPR013320	-
	Viun3g04374	670	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Viun3g04374	670	CDD	lectin_legume_LecRK_Arcelin_ConA	36	279	IPR001220	GO:0030246
	Viun3g04374	670	ProSiteProfiles	Protein kinase domain profile.	365	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g04374	670	ProSitePatterns	Protein kinases ATP-binding region signature.	371	393	IPR017441	GO:0005524
	Viun3g04374	670	Pfam	Protein kinase domain	367	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g04374	Viun-Chr3	51495930	51498345	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g04374	31	636	Receptor kinase-like Gene Family	AT1G15530	68.085	0.0	810

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun3g04374		Pkinase	5.7e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g04374	-		-	gmx:100816035	1108.59