Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04342 ATGTCTATGCCTTTCTCTCTCACAACCACGCCTTCCTTCAACTCTCTCACAATGGCGGAATCCTGCATTCTCTCTCTCCCTTCTCTCTTCCGCGTCAATAACAAAACCCTTTCTCTTTCACTTCCCTCCAAGCGCCTCAACCTCCACTTTCCATCCTCCAATTCTTCGTTCTTTCCCCTCACCACCAACACCACCCGCTTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCCGATTGGGCCCAAGAAGAGGAAGGGAACGCCGTATGGGAGAACGAAGTCGACGCCGCGTGGGGAACTGAAGAAGGTGGCGATGACGGCGTGGAGGAAGTGACCGGAGGGGGTTTCGCTCAACCACCCGAGGAAGTTAAGATCTTTGTTGGGAACTTGCCTTATGATGTTGATAGCGAGCAATTGGCTTTGCTTTTTAAGGAGGCTGGCACCGTTGAGGTTGCTGAGGTTATTTATAATAGGGTCACTGACCGGAGTCGTGGCTTTGGATTTGTCACCATGAGTACGCTTGAAGAGGTTGAGAAGGCTGTCCAGAAGTTCAGTGGTTACGAACTAAATGGAAGAGTGTTGACCGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGACCGCTCATCACGGCCACCACGAACCTTTAGTTCTGCTACAAGAATCTACGTTGGGAACTTGCCATGGACTGTTGACAATGCACGGCTAGAGCAAGTTTTTAGTGAACATGGTAAGGTTGAGGAGGCTAGGGTGGTCTCTGACAGGGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGGCCAGTGAGGCTGATGTGAATGATGCAATTGCTGCTCTTGATGGTCAGGAATTGGATGGGAGACCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCAGCTCCTATTGA 918 0.5076 MSMPFSLTTTPSFNSLTMAESCILSLPSLFRVNNKTLSLSLPSKRLNLHFPSSNSSFFPLTTNTTRFPSLLTFVAQTSDWAQEEEGNAVWENEVDAAWGTEEGGDDGVEEVTGGGFAQPPEEVKIFVGNLPYDVDSEQLALLFKEAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVQKFSGYELNGRVLTVNKAAPKGAQPDRSSRPPRTFSSATRIYVGNLPWTVDNARLEQVFSEHGKVEEARVVSDRETGRSRGFGFVTMASEADVNDAIAALDGQELDGRPIRVNVAEERPRRSSY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04342 305 Gene3D - 208 304 IPR012677 -
Viun3g04342 305 PANTHER OS02G0815200 PROTEIN 35 301 - -
Viun3g04342 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 194 IPR000504 GO:0003723
Viun3g04342 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Viun3g04342 305 CDD RRM2_NsCP33_like 221 296 - -
Viun3g04342 305 SMART rrm1_1 124 197 IPR000504 GO:0003723
Viun3g04342 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Viun3g04342 305 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Viun3g04342 305 Gene3D - 105 207 IPR012677 -
Viun3g04342 305 FunFam 31 kDa ribonucleoprotein, chloroplastic 210 304 - -
Viun3g04342 305 SUPERFAMILY RNA-binding domain, RBD 119 213 IPR035979 GO:0003676
Viun3g04342 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Viun3g04342 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04342 Viun-Chr3 51232141 51234908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04342 125 302 Eukaryotic Initiation Factors Gene Family AT3G16380 33.690 1.28e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04342 - - gmx:100811487 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04342 3 51232141 51234908 Viun9g01389 9 14547354 14549682 ECH
Viun3g04342 3 51232141 51234908 Viun3g04342 3 51232141 51234908 ECH
Viun3g04342 3 51232141 51234908 Viun9g01389 9 14547354 14549682 PCT