Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04332 ATGGGGGTAATAGGTAATGTTACTTGGGAGGTTCCCCCATCATTTGGGGCTTGCTTAACGGACAAAACTGCCCAACTGGTATCCTGTAAAACCAGAAATCACGAAGCACCTGGGTCCTACATGTTCAGTTTAATCACGCCATTCAGCCCGTCTTCCATTCCTTTATATACACCCTCCAACTACGTACTTTCTCCTCACACTTCACCAAATCAACACATGGCCACCACCACCTCCACCTCTCTCCTCTTCCTCCTCTTCTCTCTCCTCACCCCCTCTCTCATTTCTTCTTCCCCCGTTCAGAACCCTGAATTGGTCGCCCAAGAAGTTAACAGGAAAATCAATGCCTCTGTAGCCAGGAGGAATTTGGGTTACCTGTCATGTGGGACAGGTAACCCAATAGACGACTGTTGGAGGTGTGACCCCAACTGGGAGAAGAACAGGCAGAGGCTGGCGGATTGTGCAATTGGGTTTGGGAAAAACGCGATTGGAGGAAAGAACGGGAAAATCTACGTGGTGACGGATTCCAGCGACGATGACGCGGTGACGCCTAAGCCGGGGACGCTCCGTTACGCGGTGATTCAGGAGGAGCCTCTCTGGATCATATTCGCCAGGGACATGGTGATTAAGCTGAAGGAGGAGCTTATCATGAACTCCTTCAAGACCATCGACGGAAGAGGCGCTAGCGTGCACATTGCGGGTGGGCCATGCATTACGATACAGTATGTGACCAATGTTATAATCCACGGGATAAATATCCATGACTGTAAGCAGGGGGGGAATGCTATGGTGCGGGACTCCCCACGCCACTACGGGTGGAGGACCGTATCCGACGGTGATGGCGTCTCCATCTTCGGCGGAAGCCACGTATGGGTTGACCACTGCTCCTTGTCTAACTGCAATGATGGGTTGATCGACGCCATTCACGGGTCTACCGCCATTACCATCTCCAACAATTACATGACTCACCACGATAAAGTGATGCTTTTGGGCCACAGCGACGCCTACACTCAGGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGGGAAGGTCTGGTTCAGAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCACTGGGAAATGTACGCCATTGGAGGAAGTGCAAACCCAACCATCAATAGTCAAGGCAATAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCACCAGAGAGCGAATGGAAAGGGTGGAATTGGAGGTCTGAAGGAGACCTATTAGTAAACGGTGCGTTTTTCACAGCATCGGGAGCAGGAGCGTCGTCTAGCTATGCAAGAGCCTCTAGCCTGAGCGCGAGGCCATCTTCACTGGTGGGGTCCATTACGACCACTGCGGGTGCACTCAACTGCAGGAAGGGTTCCCGCTGCTGA 1440 0.5167 MGVIGNVTWEVPPSFGACLTDKTAQLVSCKTRNHEAPGSYMFSLITPFSPSSIPLYTPSNYVLSPHTSPNQHMATTTSTSLLFLLFSLLTPSLISSSPVQNPELVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSSDDDAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTTAGALNCRKGSRC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04332 479 Gene3D - 130 472 IPR012334 -
Viun3g04332 479 FunFam Pectate lyase 130 472 - -
Viun3g04332 479 SMART amb_all 205 402 IPR002022 -
Viun3g04332 479 PANTHER PECTATE LYASE 18-RELATED 99 477 IPR045032 GO:0030570
Viun3g04332 479 Pfam Pectate lyase 212 396 IPR002022 -
Viun3g04332 479 SUPERFAMILY Pectin lyase-like 110 474 IPR011050 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 357 376 IPR018082 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 277 298 IPR018082 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 153 170 IPR018082 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 450 473 IPR018082 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 213 229 IPR018082 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 379 398 IPR018082 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 177 202 IPR018082 -
Viun3g04332 479 PRINTS Pollen allergen Amb family signature 421 445 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04332 Viun-Chr3 51115324 51117490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04332 48 479 Polysaccharide Lyase AT5G63180 77.011 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04332 K01728 - gmx:100101868 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04332 3 51115324 51117490 Viun9g01400 9 14918570 14921170 ECH
Viun1g03397 1 41181253 41183453 Viun3g04332 3 51115324 51117490 ECH
Viun9g01400 9 14918570 14921170 Viun3g04332 3 51115324 51117490 ECH
Viun3g04332 3 51115324 51117490 Viun3g04332 3 51115324 51117490 ECH
Viun3g04332 3 51115324 51117490 Viun9g01400 9 14918570 14921170 PCT