Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04330 ATGGCTTCGAACGAGGGGTTTCTGACAGACGGGCAGAGGGAACTGCTAAAAATTGCGACCCAAAATGCGGAGAATCTGACTTCGTCTCCAAAATCCCCGTCGTCCTTGCTTTCCGACCATCATGTGAAAGCCCCAGCTGGTGGTAAGGCACAAACCTCTGGGATAGCTGTGAGGCATGTGCGTCGGTCACACTCAGGGAAGTATGGGCGGGTGAAGAAAGATGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGATTGATACTGATGTTGTTTCTCACATAGATCGAAATGATCCAAATTATGACAGCGGCGAGGAACCCTATCAACTGGTTGGATCTACTGTTACTGACCCTTTGGATGAATTCAAGAAAGCAGTAGTATCCATCATAGATGAATATTTTAGTAATGGGGATGTGGAATTGGCAGCATCCGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTTATTAAACGCCTTGTGTCCATGGCAATGGACAGGCACGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCTGCATTGTATGCTGATGTCATCAGCCCTGCACAGATCAGGGATGGGTTTTTTATTCTTCTCGAATCTGCTGATGATCTTGCTGTGGATATACTGGATGCAGTTGATATCCTTGCATTATTCTTGGCACGGGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAATGAAGGCTCTTCCAGAGTCTTCCAAGGGAGTTCAGGTAATCCAGACAGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCAGAGCTTGTGGAAAGGCGATGGGGTGGTAGCACTCATATAACTGTTGAAGAAGTGAAGAAGAAGATAGCTGATTTACTTAGAGAATATGTGGATAGTGGTGACACATTGGAAGCCTGTAGGTGTATACGGGAGTTGGGGGTTTCATTCTTCCATCACGAGGTTGTTAAGAGGGCTTTGATACTTGCCATGGAGATTCGTTCAGCAGAACCTCTAATGTTGAAATTATTAAAAGAAGCAGCAGAAGAAGGACTTGTTAGTTCCAGCCAAATGGTGAAGGGGTTTTCTCGTTTAGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAGGCACTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCCTCACTTACCAAACCTGCAATGGAAGATGGGGAAATACAAGTTGAAGACGAGGAGGTGAGGAAGTACAAAAAGGAATGTGTAACTATGATTCATGAGTATTTTCTTTCTGATGACATCCCTGAACTGATTCGAAGTCTTGAAGATCTTGGAGCTCCCGAATATAACCCAATATTTTTGAAGAAGTTAATTACTTTGGCTATGGATCGAAAGAACAGAGAAAAGGAAATGGCATCTGTGCTGCTATCTGCACTTCACATAGAGATATTCTCAACTGAGGATATAGTTAATGGGTTTGTCATGCTTCTGGAAACTGCGGAAGATACAGCACTGGATATACTGGACGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTTATTGACGATGTATTGGCCCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTGCCACCAAAATGCAGCGGTAGTGAAACTGTGCGTATGGCACGGTCACTCATAGCTGCTCGTCATGCTGGGGAGAGGCTATTGAGATGCTGGGGTGGAGGCACGGGATGGGCTGTGGAGGATGCGAAGGACAAGATCATGAAGCTCTTGGAAGAGTACGAAAGTGGAGGGGTTGTGAGTGAAGCTTGCCAATGTATCCGTGACCTGGGAATGCCTTTCTTTAATCACGAGGTAGTGAAGAAAGCATTGATTATGGCCATGGAGAAAAAAAATGATCGAATGCTAGATCTGCTGCAGGAGTGCTACAGTGAGGGCCTGATCACCATTAATCAGATGACTAAGGGTTTCACCCGAATAAAGGATGGTCTTGATGATCTGGCTTTGGACATTCCAAACGCAAAGGAGAAATTTGGCTTCTACGTGGAGCATGCTCAGTCTAAGGGCTGGCTTCTACCATCATTTGACTCGCCTACCACAGATGCCTAA 2109 0.4538 MASNEGFLTDGQRELLKIATQNAENLTSSPKSPSSLLSDHHVKAPAGGKAQTSGIAVRHVRRSHSGKYGRVKKDGAGGKGTWGKLIDTDVVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIDEYFSNGDVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAMKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALILAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPAMEDGEIQVEDEEVRKYKKECVTMIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLETAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECYSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQSKGWLLPSFDSPTTDA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04330 702 FunFam programmed cell death protein 4 113 264 - -
Viun3g04330 702 FunFam programmed cell death protein 4 409 563 - -
Viun3g04330 702 SUPERFAMILY ARM repeat 417 576 IPR016024 -
Viun3g04330 702 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Viun3g04330 702 SUPERFAMILY ARM repeat 579 695 IPR016024 -
Viun3g04330 702 ProSiteProfiles MI domain profile. 582 701 IPR003891 -
Viun3g04330 702 SMART ma3_7 583 692 IPR003891 -
Viun3g04330 702 SMART ma3_7 420 531 IPR003891 -
Viun3g04330 702 SMART ma3_7 122 233 IPR003891 -
Viun3g04330 702 SMART ma3_7 286 397 IPR003891 -
Viun3g04330 702 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Viun3g04330 702 SUPERFAMILY ARM repeat 282 404 IPR016024 -
Viun3g04330 702 Gene3D - 407 563 - -
Viun3g04330 702 Gene3D - 114 262 - -
Viun3g04330 702 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Viun3g04330 702 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Viun3g04330 702 PANTHER PROGRAMMED CELL DEATH 4 4 696 IPR039778 GO:0045892
Viun3g04330 702 MobiDBLite consensus disorder prediction 24 75 - -
Viun3g04330 702 Gene3D - 570 698 - -
Viun3g04330 702 Gene3D - 272 404 - -
Viun3g04330 702 FunFam Programmed cell death protein 4 271 406 - -
Viun3g04330 702 Pfam MA3 domain 584 691 IPR003891 -
Viun3g04330 702 Pfam MA3 domain 421 530 IPR003891 -
Viun3g04330 702 Pfam MA3 domain 286 397 IPR003891 -
Viun3g04330 702 Pfam MA3 domain 122 233 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04330 Viun-Chr3 51078406 51083303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04330 586 682 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 1.34e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04330 - - gmx:100809081 1296.95