Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04329 ATGGCGGCTTCGGAGGAAGTACTTCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGTCCTACCGAGGCGGAGTTCCAAAACCCGATCGCCTATATCTTCAAAATCGAGAAAGAAGCCTCTCAGTACGGAATCTGCAAGATCATTCCCCCGCTTCCCCCCTCCCCCAAGAAAACAGCAACTGCCAACCTCACGCGCTCCCAGCCCACCTTTACCACGCGCCAACAGCAGATCGGCTTCTGCCCCCGCCGCGCGCAGCCGGTGCGCCGCCGCGTCTGGTTCAGCGGCCACCACTACTCGCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACCTCAAGAAAAGCAAACCTAAACCCTCCCCTCTCGAACTCGAAACGCTCTACTGGAAAGCCACTTTAGACAAACCCTTCTCTGTCGAATACGCGAACGACATGCCTGGCTCCGCGTTTAGCCCCCTCCGTGCTTCGCGCGATGCCGATTACGTTGGCGACACCGCGTGGAACATGAGGGCGATTTCAAGGGGAAGCGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCCGGCGTGACGTCACCCATGGTCTACGTGGCCATGTTGTTCAGCTGGTTCGCGTGGCATGTGGAGGATCACGACTTGCATAGCTTGAACTACCTCCATTTCGGCGCTCCCAAGACTTGGTACGGCGTGCCTAAGGACGCTGCCGTCGCGTTCGAGGAGGTTGTCAGAGTTCATGGCTACGGCGGCGAGATCAATCCTCTCGTTACTTTTGCTATTCTTGGGGAGAAAACCACGGTGATGTCGCCGGAGGTTTTTGTTGGCGCCGGTGTTCCCTGCTGCAGGCTAGTTCAAAATGCTGGGGAATTTGTAGTGACATTTCCAAGAGCGTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAGGCGGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGAAGGGCTTCCATTAATTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAGCCACGGAGTTCTCGGCTTAAATATAAGAGAAATGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGATCTGCTGTAGTACTTCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGCGTTGGATCACAACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGAATACAATTATGAGGGAATGGATTCCTCAGATTTTATTTCTAATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAGAGTTTTTATTCTGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTTTGCCATTAAGTTCAAATGGGAACATATACACTTCAAGTTCAAAAACACTGCAAGGAGACAGTGAAAAGGAAACAGATAAAGGAGATGGATTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTACAGCCCAGAGAACCAGCAGCTACGTACCTTATGTCGGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTTCAACTGCCCATGAAGATGCAAGTATTCCCAAGTCAAGAACATATACAGGATGGACTAAACAAAATGCCCAACATGATTCAAATGGTGTTCCCATTCAATCTGTTGAACACCATGCACAGATTGCTGATGAAAATTATGAGGAGGCTTTAAATTCTGGAAGAGAAAAAGGCAATACAGCTCTTGCATTATTGGCATCAGCGTATGGAAACTCTTCTGACTCTGAGGAAGATCAGGGGGGATTAGATATTGCACTTGATGGTGATGAATTGAATACAGTAAACCATTCAGCCACTGATGGATCTCGGGAGATGTCTAGTATGCCTTCTCATTTTCAAGATCCACATGCTAGTCCCTTGGTTAGAGTCATTAGACTTAATAAAGGAGATGATATTCATTCAAGAAGAATAGACAATTATGAGTATTATATGCATAAGAGAGTAGAACAAATTATGACTCCTTTTGACTACTCTGTTAAGTCAGAAGATCATGACAACACTTCAGGGGTGGCATTTAGAAATACCAGGGCTGTAACCCATTCCACATTGAGTTGTTCCCAAGATACTCACACAGATGAAGACTCGTCTAGAATGCATATCTTCTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGGTTATACGTGGAAGAATACTGTATACAGGCAAGCCAACAGGGAAGATGAGGGGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATTTCTTTTATAGTGCCAATCTTAGCCGTTCAGCACTTTACAGTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAACCCTCCTGCAAGCTCGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTGAGAGATCAGAAAGTAACCATAAAAGCTATACCTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTCAGAAAGGAGGAATCTGGGAAGAAAGCTTTGTCGAGAGAGATTGGCTTTCAGATAATTCCATTGAAGATAAATCCAATAAATATCAAAGGAGGATTATTGGGAGTAAGCGCTCCAGGCATATTGGGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTCTGCCACTTCATAGAAAGCCTATAACGAAGCATTCAGAATCTAGTGAAAATGATGCAATGTCTAATGATTTGCTGGATGATGATTCTTGTTTACAGCATCGGAGGAGGGCTAACACCAATGAAGCTAAATTTATTGACAGTGATGTGTTTTCAGATGATACAATGGGCTATGGTTCTGATTGGTTGCGGAGAGGGGAGCTTAGCAATGAGCAAGATGCTATTTCAGACGATTCATTGGGTGCTGGTTCTCTTCAGCTGCGTGGAAAGACTCCCAAGGGCAAGTATTGCAAATACATTACTGAAGAAGACGTGATTTCTGATGACCAAAGGGAGGTTTATTTTTGGAAGCAGAGAGGGAAGATATGTAAAGGCAGACAAAGATCACTTTCTGCTAAAAATGAAGATGGTCTGAAGCACCATAGGCAAAAGCAGCAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCCCCTTGGAGTAGAGAATATTACATCTGATGACCAAATGGAGGGTCGTTTGTTCAAGTGTCAAAGAAGGATTCCTAAAACCAGGCAAGCGAAGTTCATCGAGGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATCACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGAGCAGACAAAATAAATACAGTGATAAAGATGTCATGAATGACTTGGCAGAAAATAATTTTCATATACTGTATAGAACTCGTAAAAGTAAGCAAGTTAAAGTTATGGACAAGGACAATATAGATTCAGATGATCAAATGGATGATATTTTGCATCAGCAGCACAAACGAACTCTTCAAAGTAAGCAATCTAAAGCACAGATTCTTCAACAAACAAAAACTAATCCGCTCCATGCGAGAAACAAGACATCCCGTCCTGTGAAGCAGAAACAAGGTGCTCACACGCTAATGAAATCAAAGGCTGCTCGGCAGGCAAAGAATCAGTCTGGTAACTCCAAAGACTTAACATTACATGTGGAAGAGGACGAAGATGGTGGACCTCGCACACGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCTGAAGGAAAAGTAAAAGAAAAGAGAACCAAAAGGGAAAAGGAGAGGAATAAAACAGCTGCAAAGGTTTTAGTTTGCCATACCAAAACAAAGGATGAGGAATCAGAATATCAATGTGACATGGAGGGTTGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGCGGAAAGAAGTTTTTTTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGCAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGGGTCCACACTGGTGCTCGTCCTTACGTGTGCGCTGAGCCAGGGTGTGGGCAGACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGGAAGACTGGTCATGCAACCAAGAAGAATTGTTGA 4608 0.4427 MAASEEVLPWLKSLPVAPEYRPTEAEFQNPIAYIFKIEKEASQYGICKIIPPLPPSPKKTATANLTRSQPTFTTRQQQIGFCPRRAQPVRRRVWFSGHHYSLREFEAKAKAFHKTYLKKSKPKPSPLELETLYWKATLDKPFSVEYANDMPGSAFSPLRASRDADYVGDTAWNMRAISRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPKDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSAVVLLPRSSSDFSVCSKLRVGSQQLKVNPDFSLNEYNYEGMDSSDFISNDLMFNRNHGIKQVKSFYSVKEKFVTLCERNRVLPLSSNGNIYTSSSKTLQGDSEKETDKGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFSTAHEDASIPKSRTYTGWTKQNAQHDSNGVPIQSVEHHAQIADENYEEALNSGREKGNTALALLASAYGNSSDSEEDQGGLDIALDGDELNTVNHSATDGSREMSSMPSHFQDPHASPLVRVIRLNKGDDIHSRRIDNYEYYMHKRVEQIMTPFDYSVKSEDHDNTSGVAFRNTRAVTHSTLSCSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIGYTWKNTVYRQANREDEGRIQSALDSEEAIPGNGDWAVKLGINFFYSANLSRSALYSKQIPYNSVIYKAFGQNPPASSPTEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDETSLHGWPLPDEKIERSESNHKSYTSTRKSGKKWKKSVQKGGIWEESFVERDWLSDNSIEDKSNKYQRRIIGSKRSRHIGRDDTASEGDYSPLPLHRKPITKHSESSENDAMSNDLLDDDSCLQHRRRANTNEAKFIDSDVFSDDTMGYGSDWLRRGELSNEQDAISDDSLGAGSLQLRGKTPKGKYCKYITEEDVISDDQREVYFWKQRGKICKGRQRSLSAKNEDGLKHHRQKQQQRNLRSRQDKPLGVENITSDDQMEGRLFKCQRRIPKTRQAKFIEEEDVMSDDQLKDHFQKPQRSTRRSRQNKYSDKDVMNDLAENNFHILYRTRKSKQVKVMDKDNIDSDDQMDDILHQQHKRTLQSKQSKAQILQQTKTNPLHARNKTSRPVKQKQGAHTLMKSKAARQAKNQSGNSKDLTLHVEEDEDGGPRTRLRKRVLEKESEGKVKEKRTKREKERNKTAAKVLVCHTKTKDEESEYQCDMEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC 1535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04329 1535 Pfam JmjC domain, hydroxylase 199 317 IPR003347 -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 933 966 - -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 1016 1058 - -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 1158 1198 - -
Viun3g04329 1535 SUPERFAMILY beta-beta-alpha zinc fingers 1443 1479 IPR036236 -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 1160 1187 - -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 1299 1399 - -
Viun3g04329 1535 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1469 - -
Viun3g04329 1535 ProSiteProfiles Zinc finger C2H2 type domain profile. 1503 1534 IPR013087 -
Viun3g04329 1535 Gene3D Cupin 10 339 - -
Viun3g04329 1535 ProSitePatterns Zinc finger C2H2 type domain signature. 1505 1529 IPR013087 -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 1230 1256 - -
Viun3g04329 1535 FunFam Probable lysine-specific demethylase ELF6 1500 1529 - -
Viun3g04329 1535 ProSiteProfiles Zinc finger C2H2 type domain profile. 1443 1472 IPR013087 -
Viun3g04329 1535 ProSitePatterns Zinc finger C2H2 type domain signature. 1445 1467 IPR013087 -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 1359 1399 - -
Viun3g04329 1535 ProSiteProfiles Zinc finger C2H2 type domain profile. 1473 1502 IPR013087 -
Viun3g04329 1535 SUPERFAMILY beta-beta-alpha zinc fingers 1483 1527 IPR036236 -
Viun3g04329 1535 SMART c2h2final6 1503 1529 IPR013087 -
Viun3g04329 1535 SMART c2h2final6 1420 1442 IPR013087 -
Viun3g04329 1535 SMART c2h2final6 1473 1497 IPR013087 -
Viun3g04329 1535 SMART c2h2final6 1443 1467 IPR013087 -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 667 687 - -
Viun3g04329 1535 ProSiteProfiles JmjC domain profile. 166 335 IPR003347 -
Viun3g04329 1535 SMART cupin_9 166 335 IPR003347 -
Viun3g04329 1535 FunFam Probable lysine-specific demethylase ELF6 10 339 - -
Viun3g04329 1535 FunFam Probable lysine-specific demethylase ELF6 1470 1499 - -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 933 977 - -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 1304 1334 - -
Viun3g04329 1535 ProSitePatterns Zinc finger C2H2 type domain signature. 1475 1497 IPR013087 -
Viun3g04329 1535 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Viun3g04329 1535 SMART JmjN_1 16 57 IPR003349 -
Viun3g04329 1535 Pfam jmjN domain 18 51 IPR003349 -
Viun3g04329 1535 SUPERFAMILY Clavaminate synthase-like 131 338 - -
Viun3g04329 1535 Gene3D Classic Zinc Finger 1441 1527 - -
Viun3g04329 1535 MobiDBLite consensus disorder prediction 667 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04329 Viun-Chr3 51061708 51069981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04329 1273 1533 C2H2 Transcription Factor Family AT3G48430 45.993 8.10e-67 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g04329 JmjC 7.6e-37 CL0029