Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04328 ATGGAAGGCTCTGAATCCGATTCTGCGCCACTTTCCATTTCCAATGGCGAAGATCCCCAATTGGGGGCTTCTTCTCCCCCTCCCTCTCCTCCTCCTCAACCGTCAGATCTCAATCACGCGGCGGAGCATGAGATACTGTCTGGGGAGCTTCACAGCAAGTTGGATTTGAAGGGTGAGGATGAAACTGAGGACAAAGTTTCCGACTTGAACGACCGTGGAGGAGTTTGCGACGAAGAAACCGCTAAGGGTGATGCAGATAGTAGGGGTTCGGAGACAAATAGTTGGGATGAGGAACTGGGTGTTGATGCTGATGAAGATGGTGTTGGTATTGGTGATGTTCATGGTGATGATGGAGAGGAGCACAGGGAAGAGAGAAACAGTGATGTAACTCACCACTACCCTTTGAGGCCCGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCTATTAGGAGGAAAACCCAGGCTGTTAGAGAGAAGGCGGGTGAAAGAGAAGAATCTACAGACAGATCAAGCACAACAGAATGCAAGTATTATCAAAGATCTGGGGGTTGTAAGTTTGGCAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAACACCAGCACCAGTACCAGTTTTTGAACTTAACTTTCTTGGCCTGCCTATTCGTCAGGGGGAGAGGGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAATTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGTTGGAGGATGTGATCCTCCTTCAGGGTTTGGTAATGGAGGGCCTATGTCATTACAAGGTGTATCACGACCATCTGTACCCTCCTGGTCTTCTCCAAGATCATTAAACGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGACTGGAATGGATACCAGGCATCTGTCTACCTACCTGAGAGAAACATGCATCCACCTTCTACATTTGTCTTGAACAACCCAACAGTCGATACAAATGTTTACTTGCACCATCAAAAGCAGATATCCGTTGAAGAGTTTCCAGAAAGGCCCGGTGAACCTGAATGTAGCTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAACCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTTCCTTTGAGACCGGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACTTGCAGCCCTTAATGATGTCTGGACTTGGTGACCAGCCATACTCAAATTCAGCTAGTGTTGAGGTGGTGGCTGGGATAGGTGAAAGTACAAGTGAAACTGATGTAACAATTCAGCAATCTGTGTAA 1452 0.4552 MEGSESDSAPLSISNGEDPQLGASSPPPSPPPQPSDLNHAAEHEILSGELHSKLDLKGEDETEDKVSDLNDRGGVCDEETAKGDADSRGSETNSWDEELGVDADEDGVGIGDVHGDDGEEHREERNSDVTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAVREKAGEREESTDRSSTTECKYYQRSGGCKFGKSCKYNHTRGKISTTPAPVPVFELNFLGLPIRQGERECPYYMRTGSCKFGANCKFNHPDPTVGGCDPPSGFGNGGPMSLQGVSRPSVPSWSSPRSLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSTFVLNNPTVDTNVYLHHQKQISVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMMSGLGDQPYSNSASVEVVAGIGESTSETDVTIQQSV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04328 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 259 IPR000571 GO:0046872
Viun3g04328 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 208 IPR000571 GO:0046872
Viun3g04328 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 370 395 IPR000571 GO:0046872
Viun3g04328 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 440 IPR000571 GO:0046872
Viun3g04328 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Viun3g04328 483 SUPERFAMILY CCCH zinc finger 412 440 IPR036855 GO:0046872
Viun3g04328 483 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Viun3g04328 483 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Viun3g04328 483 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Viun3g04328 483 SMART c3hfinal6 414 441 IPR000571 GO:0046872
Viun3g04328 483 SMART c3hfinal6 368 395 IPR000571 GO:0046872
Viun3g04328 483 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g04328 483 SUPERFAMILY CCCH zinc finger 185 213 IPR036855 GO:0046872
Viun3g04328 483 MobiDBLite consensus disorder prediction 1 130 - -
Viun3g04328 483 MobiDBLite consensus disorder prediction 42 95 - -
Viun3g04328 483 Gene3D - 177 266 - -
Viun3g04328 483 Gene3D - 349 410 - -
Viun3g04328 483 Gene3D - 412 460 - -
Viun3g04328 483 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Viun3g04328 483 SUPERFAMILY CCCH zinc finger 373 397 IPR036855 GO:0046872
Viun3g04328 483 SUPERFAMILY CCCH zinc finger 236 261 IPR036855 GO:0046872
Viun3g04328 483 PANTHER PROTEIN PHOSPHATASE RELATED 30 455 - -
Viun3g04328 483 ProSiteProfiles Zinc finger C3H1-type profile. 414 442 IPR000571 GO:0046872
Viun3g04328 483 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Viun3g04328 483 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Viun3g04328 483 Gene3D - 110 174 - -
Viun3g04328 483 MobiDBLite consensus disorder prediction 107 130 - -
Viun3g04328 483 SUPERFAMILY CCCH zinc finger 135 164 IPR036855 GO:0046872
Viun3g04328 483 ProSiteProfiles Zinc finger C3H1-type profile. 368 396 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04328 Viun-Chr3 51050705 51055011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04328 364 462 C2H2 Transcription Factor Family AT3G02830 45.098 1.83e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g04328 zf-CCCH 7.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04328 - - vun:114178095 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04328 3 51050705 51055011 Viun9g01414 9 15502403 15506686 ECH
Viun3g04328 3 51050705 51055011 Viun3g04328 3 51050705 51055011 ECH
Viun3g04328 3 51050705 51055011 Viun9g01414 9 15502403 15506686 PCT