Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04326 ATGCCAATGTGCTTTACTAATTGCAGGGCAGCTTCCATTCCAAGGGTTAGTAATGGCGGGGATTACCTGCAAATGAAGTTAGTATACAGTGAACTGGTACAGATTTTTCTGTTTTTGTTTCAATGGATGGATTATCCATGCTCCTGTCTACCTTCTACTCATTATAATCTTTTCCGTGTAGTTGTGTATAAGGTGCACACTAATGGAAAGTCAGATATGTATTCAAGTGGAAGGAAAGCAACCATAAGGGAGTTCTACAGTGTTATATTACCTTCACTCCAACGACTTCATGGTGATTTGGTAGAAGCTAAGATTGCTGAAGAAAATGATCACAACTACACGGAAAATGATCAGAACTCAGATTTGGAGTTGGAGAGAGAGCATGAGTGTGGCATTTGCTTAGAATGTACCACGAAAATGGTTTTGCCTAATTGCTGCCATGCAATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCGTGTCCATTTTGCCGGAGAAGCTTAAAGAGAGTGAATTCTGGGGATTTGTGGGTTCTAACATGTCGTAGAGATGTGATTGATATGCAAACTATAAACAGAGAAGATGTGTTGCGTCTTTATCTCTTTGTGAATAATCTTCCCCATTGTACTCCTGATGCTCTTTTCCTTATGTACTATGAGTACTTAATTTAG 681 0.3891 MPMCFTNCRAASIPRVSNGGDYLQMKLVYSELVQIFLFLFQWMDYPCSCLPSTHYNLFRVVVYKVHTNGKSDMYSSGRKATIREFYSVILPSLQRLHGDLVEAKIAEENDHNYTENDQNSDLELEREHECGICLECTTKMVLPNCCHAMCINCYNDWNTRSESCPFCRRSLKRVNSGDLWVLTCRRDVIDMQTINREDVLRLYLFVNNLPHCTPDALFLMYYEYLI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04326 226 Pfam Zinc finger, C3HC4 type (RING finger) 127 174 - -
Viun3g04326 226 PANTHER RING FINGER PROTEIN 41, 151 10 224 - -
Viun3g04326 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 177 IPR013083 -
Viun3g04326 226 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Viun3g04326 226 SMART ring_2 130 167 IPR001841 -
Viun3g04326 226 FunFam RING/U-box superfamily protein 111 177 - -
Viun3g04326 226 ProSiteProfiles Zinc finger RING-type profile. 130 168 IPR001841 -
Viun3g04326 226 SUPERFAMILY RING/U-box 129 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04326 Viun-Chr3 51034534 51035862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04326 29 173 RAD5 or RAD16-like Gene Family AT5G22750 25.850 5.47e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04326 - - fve:101303422 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04326 3 51034534 51035862 Viun3g04326 3 51034534 51035862 ECH