Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04325 ATGCAGTATTACCAAATACTTCATTCAGCACCCTCTTTCATGGATTTTCTCAAGGAACTTGAGACTGATATTCAACATGCCAATGTGCTGGCAGCTTCCATTCCAAGGGTTAGTAATGGCGGGGATTACCTGCAAATGAAGTTAGTATACAGTGAACTGGTACAGATTTTTCTGTTTTTGTTTCAATGGATGGATTATCCATGCTCCTGTCTACCTTCTACTCATTATAATCTTTTCCGTGTAGTTGTGTATAAGGTGCACACTAATGGAAAGTCAGATATGTATTCAAGTGGAAGGAAAGCAACCATAAGGGAGTTCTACAGTGTTATATTACCTTCACTCCAACGACTTCATGGTGATTTGGTAGAAGCTAAGATTGCTGAAGAAAATGATCACAACTACACGGAAAATGATCAGAACTCAGATTTGGAGTTGGAGAGAGAGCATGAGTGTGGCATTTGCTTAGAATGTACCACGAAAATGGTTTTGCCTAATTGCTGCCATGCAATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCGTGTCCATTTTGCCGGAGAAGCTTAAAGAGAGTGAATTCTGGGGATTTGTGGGTTCTAACATGTCGTAGAGATGTGATTGATATGCAAACTATAAACAGAGAAGATGTGTTGCGTCTTTATCTCTTTGTGAATAATCTTCCCCATTGTACTCCTGATGCTCTTTTCCTTATGTACTATGAGTACTTAATTTAG 744 0.3884 MQYYQILHSAPSFMDFLKELETDIQHANVLAASIPRVSNGGDYLQMKLVYSELVQIFLFLFQWMDYPCSCLPSTHYNLFRVVVYKVHTNGKSDMYSSGRKATIREFYSVILPSLQRLHGDLVEAKIAEENDHNYTENDQNSDLELEREHECGICLECTTKMVLPNCCHAMCINCYNDWNTRSESCPFCRRSLKRVNSGDLWVLTCRRDVIDMQTINREDVLRLYLFVNNLPHCTPDALFLMYYEYLI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04325 247 PANTHER RING FINGER PROTEIN 41, 151 14 245 - -
Viun3g04325 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Viun3g04325 247 SMART ring_2 151 188 IPR001841 -
Viun3g04325 247 FunFam RING/U-box superfamily protein 132 198 - -
Viun3g04325 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Viun3g04325 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 198 IPR013083 -
Viun3g04325 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Viun3g04325 247 SUPERFAMILY RING/U-box 150 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04325 Viun-Chr3 51034442 51035962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04325 50 194 RAD5 or RAD16-like Gene Family AT5G22750 25.850 7.06e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04325 - - fve:101303422 338.961