Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04316 ATGGCAGCCGTTTCGCGCTTGTTCGTGATCCCAGCGGCGAGGCCCGTTCTCGCCAAAACCATATGCTTCATGTCCTCTTTTTCATCTCGCACGCTCGAACCGTGCGAACCGTCACCTTCCCCTGCGCGCTCCGAGGAAGAATCGCGAAACGTGAGGGTTTGGGCATGGTGGGACTTCAAGAACTGCCACGTGCCCCCGGATTTCGACGCCTCCAAAGTCGCACCGACAATAATGGAGGCAGTGAGAGCAAACGGAATCAAAGGACCTCTCAACATCACCGCTTTCGGCGACGTTCAACAACTCCCCAGGGCTCACCAGGAAGCACTCGCCTACACCGGCGTTCGCTTCATCCACGTCTCCGACGAGGGAAGAAACAGTGCCGACATTCTCGTTGATCTAATGTATTGGGTTTCTCAGAACCCTCCGCCGGCGCACATATTTCTGATATCCGGCGATAGAAACTTCGCTGGCACGTTACACCGCTTGAGAATGAGTAATTACAATATCTTGCTCGCTACGCCGGAGAAAACTCCCACTGTTCTCCACAGTGCTGCCACTATAGCATGGATGTGGGATTCGTTGCTCAACGGAGAAAGTCTTACTGGGAAGGTCCTCAACCACCCTCCTGATGGGCCTCTTGGCTCTTGGTATGGAAGCTACAAGGAGCCGGTGACGGTGGCGGATCCGGCGACGGAGGAACCGGTCACAGTTGCAGCTCCGCAGGCTACCTCGTTGCCCAATGTGGAGGTCTATGGGCCTTCTAAGATCACGGTTCCTAAGTCGGTTTTGACGAAGATTTGCAATATTTTGAGTTCGCATCCCAAAGGGATGAGCATTGGTAATCTTCGCGGTGAGTTGATGAAAAATCATGTGCGTTTGGATAAGAATTGGTATGGACATAAAAAGTTTTCCCGCTTTCTGTTGTCGTTGCCACAGGTAGATCTTCGGTCTACTGGTGATAGTTCCTTTAGTGTACATTTGGTTCCTGTGGAATCCATGGAACCATGTAAGAACAGCTCTTTGGAATCAACAGTTTCTGATGCTACGAATGAGGAGAAAGGATGTGCAGAGGCACCAAAGGTAAATTGTGAGGGTAAAAGTAAGGTTAGGGATGCTGACGGGAAATTGTCAATTGCCTCGGTCTCTGAAAGGAGTATGGGTGACGATTTAAAATCAGTACAACCGGGGCCTTCAAAAGGGAGACCTGTTGAGGAAAATGAGTTGCGGAAGTCTGCTGTGGATGTGGGTAATGCTCCACAGTCAGAAACTGAACTGCCACATGAGGACAGCAAAGATTCCAAAACTAAGATGGATACCCTAAAAAAGAGTTGTAAAAAATTGTCTGCTAATAACACTGCTAGGTCTAAAGTTGCTGGTATGGAAAAACATACAACTAAAGACAATCTCTCTGCTGGAAATGATCAATCGATGGTGGAAAACAATGTTATGGCTAATTATGAGTCTGGAAATTTTGAAGCAAAGAATAAATGTGAGAATCGAACTAGTAAGGAGGTTGACGATGTTTTTCCAAGCCTATCTCCACCAATTGATGACTCTGAGGCCGCCCAAAAGCCTGTCGGAAGTGCTGAAACTAATAAAAGAAGTCCAACACTGTTTCATTGGATTAGACGGTGGTGGCCATTTGGAAAAAACAATGAAAAATATGATGATTTGACGGCTCATCAGAGGGAGGGGGTTAGTCATGTTGAGGATTCCAAGTTATCTGAACTGGAGCAGACTGTTAGTCAAACTGAAGAGGCCAAATCGTCTGAACTGGATCACACTGTAAGTCAATCTGAAGAACCCAAGTTATCAGAACTGAATCAGAATGGTAGTCATTCTGGAAAGCCTGAGTTATTTTCCAGTGTTTCCTTTTGGAATGATATGGAATCTTTTATGTTTGCACCCAAAGGATCATTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGCGCAAAGGTTACAAAATGGAGGACCCCTGCTTCTCAGATCGCTCCCCAAAAAGGATATCCTTCAATTGGTTGAAATGTTAATAGCAGACAAAAAATGGTTGGAGGAAAGGCCGTCCCAAGCATTACCTTTTAAGCTAACTCAGCCAGTTCATAAGAATTTATCGGTGGACCAATCCCATGGTGGCAATGGTTTGAGATCTATCTTTCTACGCAGATCATCACAATCTCTAGAACATGATGTGGGGAAACACAATCAGAGTGTTCCTCATACACGCATTTCTGCAGCGGCTGTTGAAACAAAACGTATTGAGAGATCTAGAAATGATATATTAGATGACTGTCAGAAACTTGTTAATGAAATAGTAAGGGAACACCCAGAGGGATATAATATTGGTTGTTTCCGAAGACTATTTGTTGATAAGTATGGCTATCATCTTGATATACAGAAGCTTGGTTATCAAAAATTGGCATCCTTGCTACAGATAATGCCTGGGGTTAAGTTTGAGTCTACTTACATGTTTCCTTCTATTCCTGCTGCATGTGATTCTGATTCTGATACTATCCTCAAAACTAAAGCAATCGCTGATAGTCATACAGTCTCCAACTCAGACAGCGAATTATCTGAGTCAACCCTGGAAGATAATGACATGGAATCTGCATTGGAGGAGTTGGGTCCTGTTCCTATAAAAAATTTAGACAAGAGTGGTTTGAGTTTAAAGTCAAGTCAGAAAGCTATAGAACTAGATATATCAAAATCAAAGCATCCTGGTTATGAACTTGTTCTATCAGATGACGATACTTCTGCATCTGAAGGAGATCACTCCTATTTAACTCAATCTGAAGATCAGAGGAAATCAATTTGTAATGAACGGGACAGTTCGTTTTGGCAAACTATGGATTTGTGGCACAGCTGCAAGGAAGGAGAGAATGATGTCACAAAGTCAGACAATGTTGACAGCTTGAATGTTTCTCTGACTCATATTTTAAATTCATCCCGTGACCCAACCACTGCTTTCCCTTCCAAAACATCATCAAATTACACAGATAAACAAAGGGCTCACAAGAACTATAACTTCGTTCTTGATACAGTCTTACCTGACAAGGATGAGTCAAAGAAAACTGATGAGTCAAAGATGCAAAAACAGAGTAATTCCTGCTGCAAGTAG 3120 0.4413 MAAVSRLFVIPAARPVLAKTICFMSSFSSRTLEPCEPSPSPARSEEESRNVRVWAWWDFKNCHVPPDFDASKVAPTIMEAVRANGIKGPLNITAFGDVQQLPRAHQEALAYTGVRFIHVSDEGRNSADILVDLMYWVSQNPPPAHIFLISGDRNFAGTLHRLRMSNYNILLATPEKTPTVLHSAATIAWMWDSLLNGESLTGKVLNHPPDGPLGSWYGSYKEPVTVADPATEEPVTVAAPQATSLPNVEVYGPSKITVPKSVLTKICNILSSHPKGMSIGNLRGELMKNHVRLDKNWYGHKKFSRFLLSLPQVDLRSTGDSSFSVHLVPVESMEPCKNSSLESTVSDATNEEKGCAEAPKVNCEGKSKVRDADGKLSIASVSERSMGDDLKSVQPGPSKGRPVEENELRKSAVDVGNAPQSETELPHEDSKDSKTKMDTLKKSCKKLSANNTARSKVAGMEKHTTKDNLSAGNDQSMVENNVMANYESGNFEAKNKCENRTSKEVDDVFPSLSPPIDDSEAAQKPVGSAETNKRSPTLFHWIRRWWPFGKNNEKYDDLTAHQREGVSHVEDSKLSELEQTVSQTEEAKSSELDHTVSQSEEPKLSELNQNGSHSGKPELFSSVSFWNDMESFMFAPKGSFLFSQSRSREDVAQRLQNGGPLLLRSLPKKDILQLVEMLIADKKWLEERPSQALPFKLTQPVHKNLSVDQSHGGNGLRSIFLRRSSQSLEHDVGKHNQSVPHTRISAAAVETKRIERSRNDILDDCQKLVNEIVREHPEGYNIGCFRRLFVDKYGYHLDIQKLGYQKLASLLQIMPGVKFESTYMFPSIPAACDSDSDTILKTKAIADSHTVSNSDSELSESTLEDNDMESALEELGPVPIKNLDKSGLSLKSSQKAIELDISKSKHPGYELVLSDDDTSASEGDHSYLTQSEDQRKSICNERDSSFWQTMDLWHSCKEGENDVTKSDNVDSLNVSLTHILNSSRDPTTAFPSKTSSNYTDKQRAHKNYNFVLDTVLPDKDESKKTDESKMQKQSNSCCK 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04316 1039 MobiDBLite consensus disorder prediction 450 473 - -
Viun3g04316 1039 Pfam OST-HTH/LOTUS domain 260 321 IPR025605 -
Viun3g04316 1039 Pfam OST-HTH/LOTUS domain 763 816 IPR025605 -
Viun3g04316 1039 MobiDBLite consensus disorder prediction 914 935 - -
Viun3g04316 1039 ProSiteProfiles OST-type HTH domain profile. 258 329 IPR025605 -
Viun3g04316 1039 Gene3D - 756 824 IPR041966 -
Viun3g04316 1039 CDD PIN_limkain_b1_N_like 52 174 - -
Viun3g04316 1039 PANTHER LIMKAIN B LKAP 40 771 IPR024768 GO:0005777|GO:0010468
Viun3g04316 1039 MobiDBLite consensus disorder prediction 424 438 - -
Viun3g04316 1039 Pfam NYN domain 52 185 IPR021139 GO:0004540
Viun3g04316 1039 MobiDBLite consensus disorder prediction 380 438 - -
Viun3g04316 1039 MobiDBLite consensus disorder prediction 511 533 - -
Viun3g04316 1039 ProSiteProfiles OST-type HTH domain profile. 761 835 IPR025605 -
Viun3g04316 1039 Gene3D - 257 328 IPR041966 -
Viun3g04316 1039 MobiDBLite consensus disorder prediction 565 615 - -
Viun3g04316 1039 MobiDBLite consensus disorder prediction 1016 1030 - -
Viun3g04316 1039 CDD LOTUS 762 817 - -
Viun3g04316 1039 MobiDBLite consensus disorder prediction 601 615 - -
Viun3g04316 1039 MobiDBLite consensus disorder prediction 1009 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04316 Viun-Chr3 50945650 50949535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04316 55 197 C2H2 Transcription Factor Family AT5G61190 42.069 3.83e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04316 - - pvu:PHAVU_003G208800g 1622.06