Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04308 ATGCTATCAAGTCTGCACTCTCTTCTTCTTCTTCCTCTTATCAGAATGGCCTCTTGCACTTCCCTTTCTCTTTGTCCTCACACCTTCTGTTGCCGCCACCGCCCTTACCCTACTCGCCGTTCTCTTTCTTGCTCTCTCTCTTCTTCTTCCATCCATGATACGGATGGACCTAAAGTTCTGCGTAAAAGATCGAGAAGGATAGAAGGTCCTAGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTAAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATCCTTATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCATTAGATTCTCATACACCAATTTTTGCGTCATCCTTTACCATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAAATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAACCCGTTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACCTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCACTGTTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTTTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAGGATATTGTGTTGTATTCAGCCAAGGTTATCCCTGGCAACGAGTCTCGCGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGACATGGGTACCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGACACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTTATTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGAGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAAATATTTCGCCCACAAAATTTAGACAGTCCGGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACGACAAGATGCCTGTGGCTTGACAAGGGTAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTACTTGCTAACGAGATAAAGACGAAGCTGTCTGGAAAATTCCATGTGGATGGGACACCAACATTCAGAAAAGTGCTGGATGGACATGGGAAAGAAAATCAGAGAACCAAAACACAAATAAGAGATCGAATTGATGTAGGTGGTATACTACCTATTGAAGACATAGCTATTTCAAGTGGAGTTGAGGATGACTTGTCTGATGCGGAGGTTTCAGACGATTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTTGAAGGATGGTGGTTCTGAAGACACCGAAGAATGCAATTCTGTAAATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGCATGCGTGGGGAAATGAATGACCGATTTCAAGTTGTTAAAGGAAGAATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGCCCCGGGCAGTGTAAATCTCTGTGGACATCGTTGTTACAGAAATACGAGGAGGTGAAGAATGAGAAAAATGGCAAGAAGAAATGGCCGTATCTTGAGGAAATGGAGAGGATTCTGTCAGATAGCGAGACACCGGCATCTAAATGA 2652 0.4159 MLSSLHSLLLLPLIRMASCTSLSLCPHTFCCRHRPYPTRRSLSCSLSSSSIHDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDENPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFISLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGTPTFRKVLDGHGKENQRTKTQIRDRIDVGGILPIEDIAISSGVEDDLSDAEVSDDFFKPLVGSSPVEKSIKANNGYVPQMEKSSPLKDGGSEDTEECNSVNTSNSEPKSSKSAKRNKWKHDEVKKLIGMRGEMNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEEVKNEKNGKKKWPYLEEMERILSDSETPASK 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04308 883 Gene3D - 295 445 IPR042173 -
Viun3g04308 883 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 450 492 IPR011108 -
Viun3g04308 883 MobiDBLite consensus disorder prediction 769 783 - -
Viun3g04308 883 PANTHER RIBONUCLEASE J 11 883 - -
Viun3g04308 883 CDD RNaseJ_MBL-fold 97 508 - -
Viun3g04308 883 Pfam Myb/SANT-like DNA-binding domain 789 873 IPR044822 -
Viun3g04308 883 CDD GT1 790 855 - -
Viun3g04308 883 Gene3D - 98 510 IPR036866 -
Viun3g04308 883 SMART Lactamase_B_5a 106 303 IPR001279 -
Viun3g04308 883 MobiDBLite consensus disorder prediction 746 791 - -
Viun3g04308 883 SUPERFAMILY Metallo-hydrolase/oxidoreductase 94 508 IPR036866 -
Viun3g04308 883 ProSiteProfiles Myb-like domain profile. 784 848 IPR001005 -
Viun3g04308 883 Pfam Beta-lactamase superfamily domain 117 253 IPR001279 -
Viun3g04308 883 Gene3D - 792 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04308 Viun-Chr3 50856448 50874018 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04308 792 874 Trihelix Transcription Factor Family AT1G13450 36.471 5.79e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun3g04308 Lactamase_B_2 1.6e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04308 - - gmx:100814619 1557.73