Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04306 ATGATCGCTATATCCTTATTGATGCTGGTGTCATGTTTCCAGAGTGAACTGACCTTGATTTATGCATGGATTGCATATTTCAGCTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCATTAGATTCTCATACACCAATTTTTGCGTCATCCTTTACCATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAAATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAACCCGTTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACCTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCACTGTTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTTTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAGGATATTGTGTTGTATTCAGCCAAGGTTATCCCTGGCAACGAGTCTCGCGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGACATGGGTACCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGACACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTTATTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGAGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAAATATTTCGCCCACAAAATTTAGACAGTCCGGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACGACAAGATGCCTGTGGCTTGACAAGGGTAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTACTTGCTAACGAGATAAAGACGAAGCTGTCTGGAAAATTCCATGTGGATGGGACACCAACATTCAGAAAAGTGCTGGATGGACATGGGAAAGAAAATCAGAGAACCAAAACACAAATAAGAGATCGAATTGATGTAGGTGGTATACTACCTATTGAAGACATAGCTATTTCAAGTGGAGTTGAGGATGACTTGTCTGATGCGGAGGTTTCAGACGATTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTTGAAGGATGGTGGTTCTGAAGACACCGAAGAATGCAATTCTGTAAATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGCATGCGTGGGGAAATGAATGACCGATTTCAAGTTGTTAAAGGAAGAATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGCCCCGGGCAGTGTAAATCTCTGTGGACATCGTTGTTACAGAAATACGAGCAGGAGGTGAAGAATGAGAAAAATGGCAAGAAGAAATGGCCGTATCTTGAGGAAATGGAGAGGATTCTGTCAGATAGCGAGACACCGGCATCTAAATGA 2352 0.4077 MIAISLLMLVSCFQSELTLIYAWIAYFSYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDENPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFISLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGTPTFRKVLDGHGKENQRTKTQIRDRIDVGGILPIEDIAISSGVEDDLSDAEVSDDFFKPLVGSSPVEKSIKANNGYVPQMEKSSPLKDGGSEDTEECNSVNTSNSEPKSSKSAKRNKWKHDEVKKLIGMRGEMNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEQEVKNEKNGKKKWPYLEEMERILSDSETPASK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04306 783 CDD RNaseJ_MBL-fold 24 407 - -
Viun3g04306 783 SMART Lactamase_B_5a 4 202 IPR001279 -
Viun3g04306 783 ProSiteProfiles Myb-like domain profile. 683 747 IPR001005 -
Viun3g04306 783 CDD GT1 689 751 - -
Viun3g04306 783 MobiDBLite consensus disorder prediction 645 690 - -
Viun3g04306 783 Pfam Beta-lactamase superfamily domain 49 152 IPR001279 -
Viun3g04306 783 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 407 IPR036866 -
Viun3g04306 783 Pfam Myb/SANT-like DNA-binding domain 688 773 IPR044822 -
Viun3g04306 783 Gene3D - 691 752 - -
Viun3g04306 783 MobiDBLite consensus disorder prediction 668 682 - -
Viun3g04306 783 Gene3D - 25 409 IPR036866 -
Viun3g04306 783 Gene3D - 194 344 IPR042173 -
Viun3g04306 783 PANTHER RIBONUCLEASE J 16 783 - -
Viun3g04306 783 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 349 391 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04306 Viun-Chr3 50856447 50874018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04306 691 774 Trihelix Transcription Factor Family AT1G13450 35.294 1.20e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun3g04306 Lactamase_B_2 1.2e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04306 - - gmx:100814619 1369.37