Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04305 ATGCTATCAAGTCTGCACTCTCTTCTTCTTCTTCCTCTTATCAGAATGGCCTCTTGCACTTCCCTTTCTCTTTGTCCTCACACCTTCTGTTGCCGCCACCGCCCTTACCCTACTCGCCGTTCTCTTTCTTGCTCTCTCTCTTCTTCTTCCATCCATGATACGGATGGACCTAAAGTTCTGCGTAAAAGATCGAGAAGGATAGAAGGTCCTAGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTAAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATCCTTATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCATTAGATTCTCATACACCAATTTTTGCGTCATCCTTTACCATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAAATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAACCCGTTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACCTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCACTGTTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTTTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAGGATATTGTGTTGTATTCAGCCAAGGTTATCCCTGGCAACGAGTCTCGCGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGACATGGGTACCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGACACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTTATTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGAGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAAATATTTCGCCCACAAAATTTAGACAGTCCGGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACGACAAGATGCCTGTGGCTTGACAAGGGTAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTACTTGCTAACGAGATAAAGACGAAGCTGTCTGGAAAATTCCATGTGGATGGGACACCAACATTCAGAAAAGTGCTGGATGGACATGGGAAAGAAAATCAGAGAACCAAAACACAAATAAGAGATCGAATTGATGTAGGTGGTATACTACCTATTGAAGACATAGCTATTTCAAGTGGAGTTGAGGATGACTTGTCTGATGCGGAGGTTTCAGACGATTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTTGAAGGATGGTGGTTCTGAAGACACCGAAGAATGCAATTCTGTAAATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGCATGCGTGGGGAAATGAATGACCGATTTCAAGTTGTTAAAGGAAGAATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGCCCCGGGCAGTGTAAATCTCTGTGGACATCGTTGTTACAGAAATACGAGCAGGAGGTGAAGAATGAGAAAAATGGCAAGAAGAAATGGCCGTATCTTGAGGAAATGGAGAGGATTCTGTCAGATAGCGAGACACCGGCATCTAAATGA 2655 0.4162 MLSSLHSLLLLPLIRMASCTSLSLCPHTFCCRHRPYPTRRSLSCSLSSSSIHDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDENPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFISLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGTPTFRKVLDGHGKENQRTKTQIRDRIDVGGILPIEDIAISSGVEDDLSDAEVSDDFFKPLVGSSPVEKSIKANNGYVPQMEKSSPLKDGGSEDTEECNSVNTSNSEPKSSKSAKRNKWKHDEVKKLIGMRGEMNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEQEVKNEKNGKKKWPYLEEMERILSDSETPASK 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04305 884 Gene3D - 295 445 IPR042173 -
Viun3g04305 884 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 450 492 IPR011108 -
Viun3g04305 884 MobiDBLite consensus disorder prediction 769 783 - -
Viun3g04305 884 CDD RNaseJ_MBL-fold 97 508 - -
Viun3g04305 884 MobiDBLite consensus disorder prediction 47 74 - -
Viun3g04305 884 Gene3D - 792 853 - -
Viun3g04305 884 Pfam Myb/SANT-like DNA-binding domain 789 874 IPR044822 -
Viun3g04305 884 Gene3D - 98 510 IPR036866 -
Viun3g04305 884 SMART Lactamase_B_5a 106 303 IPR001279 -
Viun3g04305 884 MobiDBLite consensus disorder prediction 746 791 - -
Viun3g04305 884 MobiDBLite consensus disorder prediction 55 74 - -
Viun3g04305 884 SUPERFAMILY Metallo-hydrolase/oxidoreductase 94 508 IPR036866 -
Viun3g04305 884 ProSiteProfiles Myb-like domain profile. 784 848 IPR001005 -
Viun3g04305 884 Pfam Beta-lactamase superfamily domain 117 253 IPR001279 -
Viun3g04305 884 PANTHER RIBONUCLEASE J 11 884 - -
Viun3g04305 884 CDD GT1 790 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04305 Viun-Chr3 50856446 50874018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04305 792 875 Trihelix Transcription Factor Family AT3G25990 34.091 1.27e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun3g04305 Lactamase_B_2 1.6e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04305 - - gmx:100814619 1568.9