Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04303 ATGCTATCAAGTCTGCACTCTCTTCTTCTTCTTCCTCTTATCAGAATGGCCTCTTGCACTTCCCTTTCTCTTTGTCCTCACACCTTCTGTTGCCGCCACCGCCCTTACCCTACTCGCCGTTCTCTTTCTTGCTCTCTCTCTTCTTCTTCCATCCATGATACGGATGGACCTAAAGTTCTGCGTAAAAGATCGAGAAGGATAGAAGGTCCTAGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTAAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTATGATCGCTATATCCTTATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGGGTCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCGGCATTAGATTCTCATACACCAATTTTTGCGTCATCCTTTACCATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAAATAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAAACCCGTTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACCTTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCACTGTTGAGGAATATTTCAGCTGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCTACTTTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAAGATTTGCTAATTGTTACAACGGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAGGATATTGTGTTGTATTCAGCCAAGGTTATCCCTGGCAACGAGTCTCGCGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGACATGGGTACCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGACACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCATTTGAGAAACAAAAGAGTCCTTTCCAATGGTTTTATTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGAGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTGTTAGCATGGAAATATTTCGCCCACAAAATTTAGACAGTCCGGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACGACAAGATGCCTGTGGCTTGACAAGGGTAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCTGCAAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGTCATTGCTGTAGAAAATCCTGCAGCTGTACTTGCTAACGAGATAAAGACGAAGCTGTCTGGAAAATTCCATGTGGATGGGACACCAACATTCAGAAAAGTGCTGGATGGACATGGGAAAGAAAATCAGAGAACCAAAACACAAATAAGAGATCGAATTGATGTAGGTGGTATACTACCTATTGAAGACATAGCTATTTCAAGTGGAGTTGAGGATGACTTGTCTGATGCGGAGGTTTCAGACGATTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTACCACAAATGGAGAAGTCATCCCCTTTGAAGGATGGTGGTTCTGAAGACACCGAAGAATGCAATTCTGTAAATACATCAAATTCTGAACCTAAATCTTCAAAATCAGCAAAAAGAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGCATGCGTGGGGAAATGAATGACCGATTTCAAGTTGTTAAAGGAAGAATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGCCCCGGGCAGTGTAAATCTCTGTGGACATCGTTGTTACAGAAATACGAGAATTTAGCTAGATGTTCGGCCTGCATTGTAGGGCTGTTGTACCTACCAAGGTCCTTTGCAAGATCAAACTTTTGGAAATAA 2637 0.4149 MLSSLHSLLLLPLIRMASCTSLSLCPHTFCCRHRPYPTRRSLSCSLSSSSIHDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDENPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFISLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVVSMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVLRKMVRKYSGKRPEVIVIAVENPAAVLANEIKTKLSGKFHVDGTPTFRKVLDGHGKENQRTKTQIRDRIDVGGILPIEDIAISSGVEDDLSDAEVSDDFFKPLVGSSPVEKSIKANNGYVPQMEKSSPLKDGGSEDTEECNSVNTSNSEPKSSKSAKRNKWKHDEVKKLIGMRGEMNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYENLARCSACIVGLLYLPRSFARSNFWK 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04303 878 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 450 492 IPR011108 -
Viun3g04303 878 Pfam Myb/SANT-like DNA-binding domain 789 854 IPR044822 -
Viun3g04303 878 MobiDBLite consensus disorder prediction 769 783 - -
Viun3g04303 878 CDD RNaseJ_MBL-fold 97 508 - -
Viun3g04303 878 MobiDBLite consensus disorder prediction 47 74 - -
Viun3g04303 878 Gene3D - 98 510 IPR036866 -
Viun3g04303 878 Pfam Beta-lactamase superfamily domain 117 253 IPR001279 -
Viun3g04303 878 SMART Lactamase_B_5a 106 303 IPR001279 -
Viun3g04303 878 MobiDBLite consensus disorder prediction 55 74 - -
Viun3g04303 878 MobiDBLite consensus disorder prediction 746 791 - -
Viun3g04303 878 SUPERFAMILY Metallo-hydrolase/oxidoreductase 94 508 IPR036866 -
Viun3g04303 878 ProSiteProfiles Myb-like domain profile. 784 848 IPR001005 -
Viun3g04303 878 CDD GT1 790 852 - -
Viun3g04303 878 Gene3D - 792 853 - -
Viun3g04303 878 Gene3D - 295 445 IPR042173 -
Viun3g04303 878 PANTHER RIBONUCLEASE J 11 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04303 Viun-Chr3 50856445 50873621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04303 792 852 Trihelix Transcription Factor Family AT3G25990 36.066 8.88e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun3g04303 Lactamase_B_2 1.5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04303 - - gmx:100814619 1522.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04303 3 50856445 50873621 Viun9g01458 9 17402514 17417008 PCT