Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04301 ATGGTAGAAGGAGAGGGAGAGGCAGTGGTGGCGTGCAGTGACAAGAGCATGAAAATAGGAGCGTCGATGTGGGACTTGGAAACCGGAGAAAAACTGCTTCACATTCCTACATGTGCATCGCCACCTTTCGGCTTCTTGTGTTTGAGAAATCGCTTCCTCGTGGCGTCGCAACTCAACAGACACGGCTCCGTCGGCGATGGAGCCATTGCTGTTTGGTCCTTCCACAAGCCTCAACAACCACTCCTGAATTACACGGTGGAGGCTATTGGGACACTTTGTTGTACAAATGATGGCATATATCTTGTTGGAGGAGCTTTATCTGGAAATGTTTATATATGGGATGTGACTAGTGGAAAACTGTTGAAGACTTGGAGGGCTCATAATAAATCTTTAAACTGCATGTTATTTTCATTTGACAATTCTCTTCTCATATCTAGCACAGATGATGGAATGATTTTTGTTTGGTCCATGATTAGTTTGTTAGATGTAGAAGAAACAAGAAGTTCGCCACCTCCATTACATTATTTGTCAGGACATATATCCTTCATAACAGGTCTTTTAACTACACCAAATAGTAACTACTCAATCTTAATATCAAGTTCCCTTGATGGCACGTGCAAGGTTTGGGATTTTATCTCAGGAAAGCATATGCAAACTCAAGCTTATCCTTTGGCCATAACTTCCATTGCCCTTCACCAAACAGAAAGTCTTTTGTTTTGCGGAACAGAACAAGGATCAATATTTGTCGATAAGCTTGATGTTGGTCGGGGAGAAGGTCCTTTTGTTGTCATTAAAGGGCAACCACTTGAATTGAACGGACACAGTGGAGCCATTACTGCCTTAACCTCATCTCGATCATCCCTAATATCTGCCTCTGAAGATTGTTCGATTTGTGTTTGGGACATCTTTAGTTGGGAAGTCACTCGAAGGTTTAGTCTCCAAAAAGAAAGTAAATGTACCAACAATCACAACCTTGCAAATGAGAGTGGAAGCAAGTGCAAAGAATCATATATGGGCAACAAGCATGACAAAACATGTCATGGTGATAAATAA 1053 0.4169 MVEGEGEAVVACSDKSMKIGASMWDLETGEKLLHIPTCASPPFGFLCLRNRFLVASQLNRHGSVGDGAIAVWSFHKPQQPLLNYTVEAIGTLCCTNDGIYLVGGALSGNVYIWDVTSGKLLKTWRAHNKSLNCMLFSFDNSLLISSTDDGMIFVWSMISLLDVEETRSSPPPLHYLSGHISFITGLLTTPNSNYSILISSSLDGTCKVWDFISGKHMQTQAYPLAITSIALHQTESLLFCGTEQGSIFVDKLDVGRGEGPFVVIKGQPLELNGHSGAITALTSSRSSLISASEDCSICVWDIFSWEVTRRFSLQKESKCTNNHNLANESGSKCKESYMGNKHDKTCHGDK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04301 350 Pfam WD domain, G-beta repeat 172 210 IPR001680 GO:0005515
Viun3g04301 350 Pfam WD domain, G-beta repeat 118 156 IPR001680 GO:0005515
Viun3g04301 350 Pfam WD domain, G-beta repeat 270 301 IPR001680 GO:0005515
Viun3g04301 350 SMART WD40_4 264 301 IPR001680 GO:0005515
Viun3g04301 350 SMART WD40_4 213 251 IPR001680 GO:0005515
Viun3g04301 350 SMART WD40_4 169 210 IPR001680 GO:0005515
Viun3g04301 350 SMART WD40_4 117 156 IPR001680 GO:0005515
Viun3g04301 350 SMART WD40_4 77 114 IPR001680 GO:0005515
Viun3g04301 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 219 IPR001680 GO:0005515
Viun3g04301 350 MobiDBLite consensus disorder prediction 330 350 - -
Viun3g04301 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515
Viun3g04301 350 Gene3D - 221 320 IPR015943 GO:0005515
Viun3g04301 350 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 306 IPR011047 -
Viun3g04301 350 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Viun3g04301 350 PANTHER WD-REPEAT PROTEIN 18 7 324 IPR045227 -
Viun3g04301 350 MobiDBLite consensus disorder prediction 335 350 - -
Viun3g04301 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 157 - -
Viun3g04301 350 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Viun3g04301 350 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Viun3g04301 350 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Viun3g04301 350 Gene3D - 2 220 IPR015943 GO:0005515
Viun3g04301 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 302 - -
Viun3g04301 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 157 IPR001680 GO:0005515
Viun3g04301 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 210 - -
Viun3g04301 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 123 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04301 Viun-Chr3 50731117 50739645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04301 101 302 U-box Gene Family AT2G33340 23.113 1.77e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04301 K14829 - gmx:102662801 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04301 3 50731117 50739645 Viun3g04301 3 50731117 50739645 ECH