Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04298 ATGGATATGGTCATAGATGTTGTCTCCGGTGCGCACTTCTCGGGTTGGCAACCTTCAACGACGTCGTCTTGTTCTCCAACTTCATCTCATCAACCTTTCATCATTGGTGTCTCTGGAGGCACTGCATCGGGGAAAACCACTGTGTGCGACATTATCGTTCAGCAACTGCAAGATCACAGAGTTGTGCTCCTCTCTCAGGATTCATTCTACCGCGGTTTGACGAATGAGGAGTTGAAACGCGTTCATGAGTATAACTTTGATCATCCTAATGCATTTGACACAGATCAACTAGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAGATTCCAATATATGATTTCAAGCTTCATCAGAGATCTAACGACAGATCTCGACAGGTCAATGGATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTCGATGCAGATCCAGATGTGAGGCTTGCCCGCAGAATAAAACGTGATACAGTCGAAAGGGGTAGAGATGTACAATCAGTCTTGGAACAGTATGCAAAGTTTGTTAAGCCTGCCTATGAAGATTTTATTCTTCCATCCAAAAAATATGCCGACATCATAATACCTCGCGGGGGAGAGAATGGTGTAGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAAATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGATAAGGACATATCAAAGCATGATTTCATTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTAATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCCATTATTCGAAGTGGCGAAAGTATGGAAAATGCCTTTCGTGCTTGCTGTAATGGAATAAAGATCGGAAAAATTCTCATTCACCGCGATGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCGGAGAGACATGTTCTACTCATGGACCCAGTACTCGGTACAGGTAACACTGCAAGCGAAGCAATCGAGCTTCTGATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGCATACATTGTGTTTGTAAACGTTTTCCGCATCTCAAAATTGTCACATCGGAGATCGAAAAAGGATTAAATGACCAGTTCCAGGTCATACCAGGGTTGGGCGAATTTGGAGACCGTTACTTTGGTACGGACGATTCGTAG 1362 0.4207 MDMVIDVVSGAHFSGWQPSTTSSCSPTSSHQPFIIGVSGGTASGKTTVCDIIVQQLQDHRVVLLSQDSFYRGLTNEELKRVHEYNFDHPNAFDTDQLVETLGQLKSGQSVQIPIYDFKLHQRSNDRSRQVNGSDVIIMEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIKRDTVERGRDVQSVLEQYAKFVKPAYEDFILPSKKYADIIIPRGGENGVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDKDISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENAFRACCNGIKIGKILIHRDGDETQLIYEKLPKDISERHVLLMDPVLGTGNTASEAIELLIKKGVPESQIIFLNLISAPEGIHCVCKRFPHLKIVTSEIEKGLNDQFQVIPGLGEFGDRYFGTDDS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04298 453 Gene3D - 28 235 IPR027417 -
Viun3g04298 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 225 IPR027417 -
Viun3g04298 453 PRINTS Uridine kinase signature 107 122 - -
Viun3g04298 453 PRINTS Uridine kinase signature 200 213 - -
Viun3g04298 453 PRINTS Uridine kinase signature 178 189 - -
Viun3g04298 453 PRINTS Uridine kinase signature 164 174 - -
Viun3g04298 453 PRINTS Uridine kinase signature 32 49 - -
Viun3g04298 453 PRINTS Uridine kinase signature 62 73 - -
Viun3g04298 453 FunFam Uridine kinase 236 450 - -
Viun3g04298 453 FunFam Uridine kinase 29 235 - -
Viun3g04298 453 PANTHER URIDINE KINASE 27 361 - -
Viun3g04298 453 Pfam Phosphoribulokinase / Uridine kinase family 34 220 IPR006083 GO:0005524|GO:0016301
Viun3g04298 453 CDD UMPK 34 232 IPR000764 -
Viun3g04298 453 CDD PRTases_typeI 309 423 IPR000836 -
Viun3g04298 453 NCBIfam uridine kinase 31 232 IPR000764 -
Viun3g04298 453 Pfam Uracil phosphoribosyltransferase 250 450 - -
Viun3g04298 453 ProSiteProfiles UvrC family, homology region profile. 120 217 IPR001162 GO:0009381
Viun3g04298 453 SUPERFAMILY PRTase-like 235 451 IPR029057 -
Viun3g04298 453 Gene3D - 236 450 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04298 Viun-Chr3 50702309 50707757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04298 1 452 PRT Gene Family AT5G40870 75.630 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04298 K00876 - gmx:100816209 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04298 3 50702309 50707757 Viun3g04298 3 50702309 50707757 ECH