Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04296 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAATAAACCTCCTTCGCCGAAGCGTCAGAAGGTAGACAATGGTGGTTCGTCGGAGAAACCTGTGCCGAAACCTGTGCCGACACCTGCCGAGAATTCAAAGGATTTACGTAGTTTGGAACCCGTGCCTGATCCTGGGGAATGTGGCTCTGCTGACGTTCAGATCGCCGGAGGGGGTTCCGCCGATGGAGTGAGTTCCGGCAAGGTTGATGCTACGCCAGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCTTCCTTCTCTTCATGGAGTGTATATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTCTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAACTTCACCATTGGTTCTAATAGAAGTTGCAACTTTGCACTGAAGGATCAGACTATAAGTGGAAATTTGTGTAAGATCAAGCACACGCAGCGTGATGGAAGTGCTGTAGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGTTAGTAAATGGGACGCATGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTTAATACTGAGGTTGCAATCAGGGGTGCGGAAGTTCCAAGTGGTGTTGGGAAATATCTGCAGCTTGAAAGGAAAAGTGGAGATCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCTGGGTACTGATGTCTCTAGTCATCCTATTCATGATAGTACAGAAATTGAACTTGATGCCTCAGAGTCAACTCCAAATCATACTGATAAAGCAGAAGATGCTCAAACAAATGAGAAGAATTCAACGATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTTTTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCTGCATCAACTTTGGGTACATCTGTACGCTGTGCGGTGTTTAAAGAAGATGTTCATGCCGTTATATTGGATGGAAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTTTATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTGCTGTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATACTGAAAAATCTTTCAGCAGCACTAAGCAAAGTCCTACAGCAACAAAAATGACTGGGAGCGCGGATCCACCTGCTACTGAAACAGAGGCACCTAGCTCTTCAAATGCACCATCACTGGGCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCCAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGTGTATATCAAACATCCTCAAGGGGACCATCTAATGGAGGTCGGGGGAAGGTAGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCTTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACTGATCTTCGCTTGGAAAGTAGCGCTGTAGAAGAATTGGACAAATTACTTATTCATTCTTTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAATGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCATATGCATTTAAAAGCAAGCTTGAAAATCTTCCAAACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAGAAGTCACATCCTGGTGGTTTGCTATTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAACCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCTCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGACGTTGAAACTCTCAAAATCAAAGGGAATTTACATCACTTGCGTGCAGTTTTGGGACGATGTGGAATGGAATGTGAAGGACTTGAGACGTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCCGTCCAGAATGAGTCGAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTCTGGCTGACGTTATTCCTCCTAGTGACATTGATGTTACATTTGATGATATTGGAGCGCTTGAAAAGGTCAAGGATACATTGAAAGAGTTGGTGATGCTTCCTTTACAGCGACCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTGTTTGGTCCTCCTGGAACGGGTAAAACAATGCTCGCAAAAGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTAAATTGGGATGGCTTACGTACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGAATGCCAAGAAGATTGATGGTAAATTTACCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTCATACTGGCCAAAGAGGAATTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACAGATGGATATTCCGGAAGTGATCTTAAGAATCTATGTGTTACGGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAAGAAAAAAAGGACCGCGTTACTGCACTAGCAGAAGGCCAACCAGCTCCAGCGTTATGTAGCAGTGGGGACGTCAGATCATTAAACATGGAGGACTTCAAATATGCTCATCAACAGGTTTGTGCAAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3591 0.4275 MVSTRRSGSLSANNSKRSSSSENKPPSPKRQKVDNGGSSEKPVPKPVPTPAENSKDLRSLEPVPDPGECGSADVQIAGGGSADGVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKHTQRDGSAVAVLESTGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAIRGAEVPSGVGKYLQLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHLGTDVSSHPIHDSTEIELDASESTPNHTDKAEDAQTNEKNSTMDCNPDAGAEAGNVLEEKNGTLDMQAASTLGTSVRCAVFKEDVHAVILDGKEIDVSFDNFPYYLSESTKNVLVAACFMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNTEKSFSSTKQSPTATKMTGSADPPATETEAPSSSNAPSLGFDSQPKLETDNMPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRNAPFILFMKDAEKSIVGNGDSYAFKSKLENLPNNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDRVTALAEGQPAPALCSSGDVRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04296 1196 MobiDBLite consensus disorder prediction 300 327 - -
Viun3g04296 1196 MobiDBLite consensus disorder prediction 278 299 - -
Viun3g04296 1196 Pfam ATPase family associated with various cellular activities (AAA) 932 1061 IPR003959 GO:0005524|GO:0016887
Viun3g04296 1196 Pfam FHA domain 149 218 IPR000253 GO:0005515
Viun3g04296 1196 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 890 1066 - -
Viun3g04296 1196 Gene3D - 890 1171 IPR027417 -
Viun3g04296 1196 SUPERFAMILY SMAD/FHA domain 117 228 IPR008984 GO:0005515
Viun3g04296 1196 Coils Coil 852 872 - -
Viun3g04296 1196 CDD FHA 148 228 - -
Viun3g04296 1196 SMART AAA_5 928 1065 IPR003593 GO:0016887
Viun3g04296 1196 Gene3D - 127 235 - -
Viun3g04296 1196 Pfam AAA+ lid domain 1085 1120 IPR041569 -
Viun3g04296 1196 ProSiteProfiles Forkhead-associated (FHA) domain profile. 148 201 IPR000253 GO:0005515
Viun3g04296 1196 MobiDBLite consensus disorder prediction 278 342 - -
Viun3g04296 1196 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 371 1195 - -
Viun3g04296 1196 MobiDBLite consensus disorder prediction 1 26 - -
Viun3g04296 1196 MobiDBLite consensus disorder prediction 1 90 - -
Viun3g04296 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 890 1171 IPR027417 -
Viun3g04296 1196 Gene3D - 1064 1158 - -
Viun3g04296 1196 MobiDBLite consensus disorder prediction 485 540 - -
Viun3g04296 1196 CDD RecA-like_ATAD1 895 1061 - -
Viun3g04296 1196 ProSitePatterns AAA-protein family signature. 1035 1054 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04296 Viun-Chr3 50675376 50686929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04296 891 1123 Calmodulin-binding Proteins AT3G56690 40.506 1.31e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04296 - - gmx:100816731 2098.17