Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04295 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAATAAACCTCCTTCGCCGAAGCGTCAGAAGGTAGACAATGGTGGTTCGTCGGAGAAACCTGTGCCGAAACCTGTGCCGACACCTGCCGAGAATTCAAAGGATTTACGTAGTTTGGAACCCGTGCCTGATCCTGGGGAATGTGGCTCTGCTGACGTTCAGATCGCCGGAGGGGGTTCCGCCGATGGAGTGAGTTCCGGCAAGGTTGATGCTACGCCAGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCTTCCTTCTCTTCATGGAGTGTATATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTCTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAACTTCACCATTGGTTCTAATAGAAGTTGCAACTTTGCACTGAAGGATCAGACTATAAGTGGAAATTTGTGTAAGATCAAGCACACGCAGCGTGATGGAAGTGCTGTAGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGTTAGTAAATGGGACGCATGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTTAATACTGAGGTTGCAATCAGGGGTGCGGAAGTTCCAAGTGGTGTTGGGAAATATCTGCAGCTTGAAAGGAAAAGTGGAGATCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCTGGGTACTGATGTCTCTAGTCATCCTATTCATGATAGTACAGAAATTGAACTTGATGCCTCAGAGTCAACTCCAAATCATACTGATAAAGCAGAAGATGCTCAAACAAATGAGAAGAATTCAACGATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTAAAACTCTCTGGGGTTAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTTTTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCTGCATCAACTTTGGGTACATCTGTACGCTGTGCGGTGTTTAAAGAAGATGTTCATGCCGTTATATTGGATGGAAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTTTATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTGCTGTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATACTGAAAAATCTTTCAGCAGCACTAAGCAAAGTCCTACAGCAACAAAAATGACTGGGAGCGCGGATCCACCTGCTACTGAAACAGAGGCACCTAGCTCTTCAAATGCACCATCACTGGGCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCCAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGTGTATATCAAACATCCTCAAGGGGACCATCTAATGGAGGTCGGGGGAAGGTAGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCTTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACTGATCTTCGCTTGGAAAGTAGCGCTGTAGAAGAATTGGACAAATTACTTATTCATTCTTTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAATGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCATATGCATTTAAAAGCAAGCTTGAAAATCTTCCAAACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAGAAGTCACATCCTGGTGGTTTGCTATTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAACCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCTCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGACGTTGAAACTCTCAAAATCAAAGGGAATTTACATCACTTGCGTGCAGTTTTGGGACGATGTGGAATGGAATGTGAAGGACTTGAGACGTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCCGTCCAGAATGAGTCGAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTCTGGCTGACGTTATTCCTCCTAGTGACATTGATGTTACATTTGATGATATTGGAGCGCTTGAAAAGGTCAAGGATACATTGAAAGAGTTGGTGATGCTTCCTTTACAGCGACCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTGTTTGGTCCTCCTGGAACGGGTAAAACAATGCTCGCAAAAGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTAAATTGGGATGGCTTACGTACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGAATGCCAAGAAGATTGATGGTAAATTTACCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTCATACTGGCCAAAGAGGAATTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACAGATGGATATTCCGGAAGTGATCTTAAGAATCTATGTGTTACGGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAAGAAAAAAAGGACCGCGTTACTGCACTAGCAGAAGGCCAACCAGCTCCAGCGTTATGTAGCAGTGGGGACGTCAGATCATTAAACATGGAGGACTTCAAATATGCTCATCAACAGGTTTGTGCAAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3690 0.4263 MVSTRRSGSLSANNSKRSSSSENKPPSPKRQKVDNGGSSEKPVPKPVPTPAENSKDLRSLEPVPDPGECGSADVQIAGGGSADGVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKHTQRDGSAVAVLESTGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAIRGAEVPSGVGKYLQLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHLGTDVSSHPIHDSTEIELDASESTPNHTDKAEDAQTNEKNSTMDCNPDAGAEAGNVKLSGVNDFLRPFFRILARPSCKLKLSKSICKQVLEEKNGTLDMQAASTLGTSVRCAVFKEDVHAVILDGKEIDVSFDNFPYYLSESTKNVLVAACFMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNTEKSFSSTKQSPTATKMTGSADPPATETEAPSSSNAPSLGFDSQPKLETDNMPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRNAPFILFMKDAEKSIVGNGDSYAFKSKLENLPNNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDRVTALAEGQPAPALCSSGDVRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04295 1229 SMART AAA_5 961 1098 IPR003593 GO:0016887
Viun3g04295 1229 MobiDBLite consensus disorder prediction 300 327 - -
Viun3g04295 1229 MobiDBLite consensus disorder prediction 278 299 - -
Viun3g04295 1229 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 923 1099 - -
Viun3g04295 1229 Coils Coil 885 905 - -
Viun3g04295 1229 Gene3D - 923 1204 IPR027417 -
Viun3g04295 1229 Pfam ATPase family associated with various cellular activities (AAA) 965 1094 IPR003959 GO:0005524|GO:0016887
Viun3g04295 1229 Pfam AAA+ lid domain 1118 1153 IPR041569 -
Viun3g04295 1229 CDD FHA 148 228 - -
Viun3g04295 1229 Gene3D - 127 235 - -
Viun3g04295 1229 Pfam FHA domain 149 218 IPR000253 GO:0005515
Viun3g04295 1229 MobiDBLite consensus disorder prediction 518 573 - -
Viun3g04295 1229 ProSiteProfiles Forkhead-associated (FHA) domain profile. 148 201 IPR000253 GO:0005515
Viun3g04295 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 1204 IPR027417 -
Viun3g04295 1229 MobiDBLite consensus disorder prediction 1 90 - -
Viun3g04295 1229 MobiDBLite consensus disorder prediction 1 26 - -
Viun3g04295 1229 CDD RecA-like_ATAD1 928 1094 - -
Viun3g04295 1229 Gene3D - 1097 1191 - -
Viun3g04295 1229 SUPERFAMILY SMAD/FHA domain 117 228 IPR008984 GO:0005515
Viun3g04295 1229 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 404 1228 - -
Viun3g04295 1229 MobiDBLite consensus disorder prediction 278 338 - -
Viun3g04295 1229 ProSitePatterns AAA-protein family signature. 1068 1087 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04295 Viun-Chr3 50675376 50686929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04295 924 1156 Calmodulin-binding Proteins AT3G56690 40.506 1.25e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04295 - - gmx:100816731 2167.5