Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04277 ATGGCCACCACAAGGTCACCTAACCATTCTTCCGAGGAAGGCGCCGATCCCACGCCGTTCCTCGGCGCTTCTTCCGACGACTCTAACTCCGGCCGCCGTCTCCTCCGCCGCCCCAGCCTACGCGAGGCGGCACGCTTCCTGAGGCAGGCGAGCGGCCGCCGATTGATGCGCGAGCCGTCGATGGTCGTGCGGGAGGCGGCGGCGGAGCAATTGGAAGAAAGACAGAGCGATTGGGCCTATTCGAAGCCCGTTGTAGTCTTGGATATTCTCTGGAACTTCGCGTTCGTCGCCGCGGCCGCCACCGTCTTGATTCTTAGTCGCGACGAGAATCCGAATATGCCCCTGAGGTTGTGGATAGTAGGCTACGCTATGCAGTGCGTTCTTCACGTCGCGTGTGTGTGCTTTGAGTACCGGAGGCGGCAGCGCCGCCGTGAACAGTCCAGCGCCGCCGTTGCTGTTGGCGGCAGCGGGGATTTGAGTTCGGCTTCGATGGAAGGCTCTGGACACTACGTGTCGTTGCCGCAGCTCGAGGACGATGGTATAAGTATGGCCAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTCATTTGGTGGGTTGTTGGATTCTACTGGATATCAGCTGACAGTGAAGCTTTGGTCCAACATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGCATTGCACTAGCATGCATCATTGGTATAGCTGTTTGCTGTTGTCTACCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGATATTGAGCAATTGTCAAAATTCAAGTTCCAGAGAACTGAAACTAATGAGAAACTTGATGGGAATACACAAGGAACTGCTGGAGGAATAATGACTGAATGCGATACTGATTCTCCCATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGATGGGGTTGAACTTAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTCTGCAAGTACAATATCTTGAAAAGTACCAGTCATGGTCAAGACGAAGTTTAG 1137 0.5163 MATTRSPNHSSEEGADPTPFLGASSDDSNSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVAAAATVLILSRDENPNMPLRLWIVGYAMQCVLHVACVCFEYRRRQRRREQSSAAVAVGGSGDLSSASMEGSGHYVSLPQLEDDGISMAKHLESANTMFSFIWWVVGFYWISADSEALVQHSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKLDGNTQGTAGGIMTECDTDSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCSCVDKWLHINATCPLCKYNILKSTSHGQDEV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04277 378 CDD RING-H2_RNF6-like 322 364 - -
Viun3g04277 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 377 IPR013083 -
Viun3g04277 378 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Viun3g04277 378 MobiDBLite consensus disorder prediction 1 36 - -
Viun3g04277 378 SMART ring_2 323 363 IPR001841 -
Viun3g04277 378 FunFam E3 ubiquitin-protein ligase At1g12760 309 374 - -
Viun3g04277 378 SUPERFAMILY RING/U-box 314 371 - -
Viun3g04277 378 PANTHER TARGET OF ERK KINASE MPK-1 51 368 - -
Viun3g04277 378 Pfam Ring finger domain 322 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04277 Viun-Chr3 50528258 50532875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04277 1 373 C3H Transcription Factor Family AT1G68070 47.606 3.01e-117 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04277 - - gmx:100779757 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04277 3 50528258 50532875 Viun2g02545 2 31652445 31663240 PCT