Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04276 ATGTCATCGTCTTCCTCAAGCAACATCTATGACATGCCATGGGTAGAGAAGTATCGTCCCAGCAAGATCGCTGATATCGTCGGCAACGAGGACGCTGTCTCCAGATTGCAAGTCATTGCTCGCGATGGCAACATGCCCAATCTCATCTTATCAGGTCCTCCTGGGACCGGAAAAACCACTAGCATACTAGCCCTCGCTAACGAGCTTATCGGGCCAAATTGCAAGGAAGGTGTTCTTGAACTTAATGCTTCTGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTGACCCTCCCCCCTGGGAGGCACAAGATTGTAATACTGGATGAAGCTGATAGTATGACCACAGGGGCACAACAAGCATTGAGGAGGACGATGGAGATATATTCTAACTCTACTCGTTTTGCTCTTGCTTGCAATACCTCGGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATAGTGCGGTTTTCACGATTGTCTGATCAAGAGATACTTGGTCGACTCATGATTGTGGTTCAAGCCGAGAAGGTTCCCTACGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCCGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAACTTTGATGAGGCTTGTTCGGGCCTCAAGCAACTATATGATTTAGGATATTCTCCCACTGATATCATCACGACCCTTTTTCGTATCATAAAAAGCTATGATATGGCTGAGTATCTGAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGTGTTGGATCTTATCTTCAATTGTGTGGTTTATTGGCTAAGCTTTCCCTAGTTCGAGAGACGGCTAAAGCTGTATGA 993 0.4421 MSSSSSSNIYDMPWVEKYRPSKIADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALANELIGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04276 330 SUPERFAMILY post-AAA+ oligomerization domain-like 233 324 IPR008921 GO:0003677|GO:0006260
Viun3g04276 330 SMART AAA_5 44 170 IPR003593 GO:0016887
Viun3g04276 330 FunFam Replication factor C subunit 4 170 233 - -
Viun3g04276 330 Pfam ATPase family associated with various cellular activities (AAA) 48 166 IPR003959 GO:0005524|GO:0016887
Viun3g04276 330 Pfam Replication factor C C-terminal domain 234 319 IPR013748 -
Viun3g04276 330 CDD AAA 27 164 - -
Viun3g04276 330 Gene3D - 170 233 - -
Viun3g04276 330 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 12 314 - -
Viun3g04276 330 Gene3D - 234 326 - -
Viun3g04276 330 FunFam replication factor C subunit 2 234 326 - -
Viun3g04276 330 CDD HLD_clamp_RFC 169 231 - -
Viun3g04276 330 Gene3D - 6 169 IPR027417 -
Viun3g04276 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 231 IPR027417 -
Viun3g04276 330 FunFam Replication factor C subunit 4 6 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04276 Viun-Chr3 50520915 50524285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04276 10 329 Core DNA Replication Machinery Family AT1G63160 91.250 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04276 K10755 - gmx:100781364 629.402