Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04273 ATGGGCAAGGCGTCAAAGTGGTTTCGCGGGCTTCTGGGTCTCAAAAAAACAGAGCGTAGCACCTCACCTGCGAAGCCACCCAAAGAGAAACGCCGATGGAGCTTCGTTAAATCAAACACAGAAAAGGACAACAACACTGCTGCCACGTGTCCACCACAAGGAAACGACGGCAGCAAGCACGCCATGGCAGTGGCAGCAGCCACTGCTGCGGTGGCGGAAGCGGCGGTGGCTGCCGCCGAAGCTGCTGCCGTTGTTGTCAGACTAACAAGCAGCAGCGGCAGATGCACCGACGTGGGGCCCACAAGGATTCGCCAGCACTGGGCCGCCGTTAAGATCCAAGCCGCTTTTCGGGGCTGTCTGGCAAGGAGAGCACTGAGAGCATTAAAAGGGTTGGTGAAGCTGCAAGCATTAGTGAGAGGTCACATTGAGAGGAAGCGTACAGCACAATGGCTGAAAAGAGTGCAAGCACTCTTGCATACACAGGCACAAGTCTCTGCAGGCTTGGTTCTGCATGCCTCACCTTCAAGCTCAAAGTTTTCTACCCACCTCCATGGTCCAGAAACACCAGAAAAATTTGAGAGCCCTATCAGCTCTAAAAGCATGAAATATGAGCAATCACCTATATTCAAGAGAAATGGCTCCAAATCCTGTGTTCAGATCAATGGCTATCAAGAGATATGTGGTAGCAGATTGGAGAATCAAGTAACTGATCAACCATGGAGCTCAGCAAGATCATTGATAAGAACATACAGTTCCAATGATGAAAGAAATGACAGGGTTCTTGAAGTTGATTCTGGAAAACCACACTTTACAAAGCGTAGAAACCTCTCTTACTCCACGGTTTCTGATCATTACAGCAAGAGTTTGAACAGCACAAAGGAGTCAACATCTCTTCAATCTGGTCAAAGTCCATGTGGTGAAGTTCAGTCATACAGTTGCAGCTCACAAAAAGTCAACGAGATAGAGGAGAGTCCGTTCTGCACTGCTGACAACAGTCCACAATTCTTATCAGCCACTTCCAAAGACGATGGCTTCAATAGAAGCCCTTTTACCCCCGCAAGGAGTGATGGGTCTAGAAGCTACATTCGTGGTTATGCTGACTACCCAAGTTACATGGCATGCACTGAGTCTTCGAAAGCAAAGGTGAGATCTTTGAGTGCCCCAAAACAAAGGCCAAATTCTGAGAGACCTGGTTCATCAAATAGATACTCTCTTAATGGATTTGACATGTCAAGATTGGCCACACAAAGGGCAATGCATGCAAGCTTCACCAACAAGGCATATCCCGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTCGGGTACAGATTCTGA 1338 0.4836 MGKASKWFRGLLGLKKTERSTSPAKPPKEKRRWSFVKSNTEKDNNTAATCPPQGNDGSKHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSSSGRCTDVGPTRIRQHWAAVKIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAQWLKRVQALLHTQAQVSAGLVLHASPSSSKFSTHLHGPETPEKFESPISSKSMKYEQSPIFKRNGSKSCVQINGYQEICGSRLENQVTDQPWSSARSLIRTYSSNDERNDRVLEVDSGKPHFTKRRNLSYSTVSDHYSKSLNSTKESTSLQSGQSPCGEVQSYSCSSQKVNEIEESPFCTADNSPQFLSATSKDDGFNRSPFTPARSDGSRSYIRGYADYPSYMACTESSKAKVRSLSAPKQRPNSERPGSSNRYSLNGFDMSRLATQRAMHASFTNKAYPGSGRLDKLGMPVGYRF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04273 445 MobiDBLite consensus disorder prediction 178 197 - -
Viun3g04273 445 SMART iq_5 127 148 IPR000048 GO:0005515
Viun3g04273 445 SMART iq_5 104 126 IPR000048 GO:0005515
Viun3g04273 445 MobiDBLite consensus disorder prediction 15 57 - -
Viun3g04273 445 Pfam Protein of unknown function (DUF4005) 332 407 IPR025064 -
Viun3g04273 445 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Viun3g04273 445 MobiDBLite consensus disorder prediction 381 405 - -
Viun3g04273 445 Gene3D - 103 158 - -
Viun3g04273 445 Pfam IQ calmodulin-binding motif 106 126 IPR000048 GO:0005515
Viun3g04273 445 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Viun3g04273 445 MobiDBLite consensus disorder prediction 39 53 - -
Viun3g04273 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 153 IPR027417 -
Viun3g04273 445 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Viun3g04273 445 MobiDBLite consensus disorder prediction 21 38 - -
Viun3g04273 445 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04273 Viun-Chr3 50515990 50518984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04273 1 445 IQD Protein Family AT4G23060 42.264 1.73e-72 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04273 - - gmx:100793587 711.449