Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04263 ATGGCTTCATCCTCATCTTCATCAAAGAGACATCCACTGTACCATGGAATCCGTTGCCGCGGAGGAAAATGGGTCACTGAAATCCGTGAGCCACGTAAGACCAACCGCATATGGTTGGGCACGTTCCTCACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGGCTCTCAAAGGCGGCGAGGCGGTTCTCAACTTCCCGGACTCAGTTGCCAAGTATCCAGTTCCCGCGTCCAAATCCCCTGCGGACATCCGCAGCGCAGCCATTGCTGCAGCAGAACTCATGAAGTCTGAAGTCAGCCGCAACAACGTTAATGCAGTAGCTCAGTCTGATAACACAGAGGGTGATGGTTACGGTTACGATAATGCTGTTGGTCCCTCGTATGAAACTGAGTTTGTCGACGAGGAAGCCATATTCTCGATGCCGAGTTTGCTGGTCGACATGGCTGAGGGAATGTTGCTAACCCCTCCCAGAATGAGCTCACCCTCTGATTACTCGACCGAAAATTTTGTTGGAGAAAATCTGTGGAACTTTTGA 543 0.5304 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVAKYPVPASKSPADIRSAAIAAAELMKSEVSRNNVNAVAQSDNTEGDGYGYDNAVGPSYETEFVDEEAIFSMPSLLVDMAEGMLLTPPRMSSPSDYSTENFVGENLWNF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04263 180 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Viun3g04263 180 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Viun3g04263 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 168 IPR045277 GO:0003700
Viun3g04263 180 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Viun3g04263 180 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Viun3g04263 180 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Viun3g04263 180 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04263 Viun-Chr3 50395045 50396050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04263 2 180 AP2-EREBP Transcription Factor Family AT2G36450 49.468 3.88e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g04263 AP2 2.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04263 - - vra:106768065 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04263 3 50395045 50396050 Viun3g04263 3 50395045 50396050 ECH
Viun3g04263 3 50395045 50396050 Viun2g02532 2 31563202 31563773 PCT