Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04262 ATGAACATTAATTCCACACAATCATTAACCCACTCCAACCAAGCTTCCTACTTTTGCTCCTCCCCGGAAACAAGCTCCTCTCCCAACGTCCTTCACTCCGACGAGGAACTACATGCATTAGCGTCGGCGCGCCCCAAGAAACGTGCCGGCCGGAGAATCTTTAAGGAGACACGGCACCCCGTCTACCGAGGGGTGCGACAGAGGAAGAACAACAAGTGGGTCTGCGAGGTGCGTGTCCCAAATGACAAATCCACAAGGATTTGGCTCGGAACGTACCCAACCCCTGAGATGGCCGCACGTGCGCACGACGTTGCCGCGCTCGCGCTCCGAGGGAAGTCCGCTTGTCTCAACTTCGCCGATTCAGCGTGGCGGTTGCCCTTGCCGGCGTCCACAAATGCCAAGGAGATACGGCGAGTGGCGGCGGCGGCTGTTGTGGCGATTGCCGCGGAAGACAGTTGCGTCGACAAATTACAGAACGAGAATGTGAATGCGGTGGTTGAGTGCGAAGTTAGCAGGTGTGGTGTCGGCGTTGATGAAGATGACAACAGTAGGAAAGTGTTTAGGGAGTTTTGTGATTTGGATGAGATAAGAATGCCAGTCACATTAGGATTTGAAGACATGCATGAGTGGCTTCAGAACATGGCGGATGAGCCTCTGCGATCGCCTTCTTTTTTAACATATGTTAGAGACTGTACCTGTCTTGAGGATGATGCTGAAGTTTCTTTGTGGACCTTCTCCTTCTGA 744 0.5309 MNINSTQSLTHSNQASYFCSSPETSSSPNVLHSDEELHALASARPKKRAGRRIFKETRHPVYRGVRQRKNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAAAVVAIAAEDSCVDKLQNENVNAVVECEVSRCGVGVDEDDNSRKVFREFCDLDEIRMPVTLGFEDMHEWLQNMADEPLRSPSFLTYVRDCTCLEDDAEVSLWTFSF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04262 247 Gene3D AP2/ERF domain 61 120 IPR036955 GO:0003700|GO:0006355
Viun3g04262 247 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04262 247 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Viun3g04262 247 Pfam AP2 domain 60 111 IPR001471 GO:0003700|GO:0006355
Viun3g04262 247 SUPERFAMILY DNA-binding domain 61 121 IPR016177 GO:0003677
Viun3g04262 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 244 IPR045277 GO:0003700
Viun3g04262 247 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Viun3g04262 247 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Viun3g04262 247 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Viun3g04262 247 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Viun3g04262 247 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04262 Viun-Chr3 50354901 50355809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04262 40 247 AP2-EREBP Transcription Factor Family AT1G12610 46.818 3.59e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g04262 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04262 - - pvu:PHAVU_003G212800g 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04262 3 50354901 50355809 Viun3g04262 3 50354901 50355809 ECH
Viun3g04262 3 50354901 50355809 Viun2g02531 2 31546016 31546660 PCT