Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04257 ATGGCGTCCAATCAGGAGGAGCGGGACATGGATCAAGACCAAGATCAAGACGGAGGAACAACGGACCTCAGCACCAGCGACGCGGACGCAGACAAAGGCTCATCCCAAGCCACCAACCTCAATGGACTTCCCCAACACTTCCAAGACCACGCCATAGGCTTCCAAGTTCTGCCGCTCAAAAACGAGCCAACGGATTCAGACCCTGACCCGGATCCCAACGCGCCCAAACCTTCTCCGCCGCTGCCGATGCACCTTCCGCTCAAATCGCCTAGGCGCTCTTCCACCAAGGACCGCCACACCAAAGTCGAAGGCCGGGGCCGCAGGATCCGAATACCCGCCACCTGCGCTGCCCGTATCTTCCAACTCACCCGAGAGCTGGGCCACAAATCCGACGGCGAAACCGTCCGGTGGCTCCTCGAACACTCCGAGCAGGCCATCATAGAAGCCACCGGCACAGGCACGGTACCGGCCATAGCGGTCTCTGTCGGCGGCGCGCTCAAAATCCCAACGACCTCGAGCGCCAACCAAAACAAGGGCGAAGAAGGCGCGTCTAACAAGAAACGGAAACGCCCTTCCAACAGCGAGTTCGTGGACATAAACGATACCGTTTCGCAGACGTCCGGTTTGGCCCCGGTTCAAGTACCCCAAGGACTGGTCCCGGTCTGGGCCGTAAGTAACCCCAACATGGTGGTCCCCGCCAACACTTTCTGGATGATCCCGCAGGCCGCGACCACCAGCAACCCCTTGGGCGGAGTTACGGGCCCCACCAGCTACCAGCCTCAGATATGGGCCTTATCTCCCTCGATGTTCAACGTGGCGGCCAGGCCCATATCGCCTCTGGTGACGACAACGAATATTCCAGAAGCTTGGTCCGTCATGAGGGCCTGCAGTAACGGTTCTAACTCGGCAGCGGTGAGTACGAGCACGTTGGGGGCTAAGTCGGCTACCAATTCCAGCATGGCCCCTAGTGTTCCTTCCAGCGCCACCAAGACTCAGACGTTGAGGGATTTTTCCCTCCAAATTTACGACAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGCCCAAACGCCAACCCATGA 1080 0.5926 MASNQEERDMDQDQDQDGGTTDLSTSDADADKGSSQATNLNGLPQHFQDHAIGFQVLPLKNEPTDSDPDPDPNAPKPSPPLPMHLPLKSPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHSEQAIIEATGTGTVPAIAVSVGGALKIPTTSSANQNKGEEGASNKKRKRPSNSEFVDINDTVSQTSGLAPVQVPQGLVPVWAVSNPNMVVPANTFWMIPQAATTSNPLGGVTGPTSYQPQIWALSPSMFNVAARPISPLVTTTNIPEAWSVMRACSNGSNSAAVSTSTLGAKSATNSSMAPSVPSSATKTQTLRDFSLQIYDKQELQFLGRSGPNANP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04257 359 ProSiteProfiles TCP domain profile. 95 149 IPR017887 -
Viun3g04257 359 MobiDBLite consensus disorder prediction 169 196 - -
Viun3g04257 359 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 345 IPR005333 GO:0003700
Viun3g04257 359 MobiDBLite consensus disorder prediction 17 45 - -
Viun3g04257 359 MobiDBLite consensus disorder prediction 70 86 - -
Viun3g04257 359 MobiDBLite consensus disorder prediction 181 195 - -
Viun3g04257 359 MobiDBLite consensus disorder prediction 90 104 - -
Viun3g04257 359 MobiDBLite consensus disorder prediction 1 104 - -
Viun3g04257 359 Pfam TCP family transcription factor 94 189 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04257 Viun-Chr3 50295845 50297298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04257 58 350 TCP Transcription Factor Family AT2G45680 46.828 5.69e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun3g04257 TCP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04257 - - gmx:100797827 448.358