Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04245 ATGATTTTATTGCACATATATGTAATTAATAATTTAGGCAAGAAAGGGAGAGGGCTTTATATAAAGGTGGGTGGGGAGTGGGGCTTTTGGGTCATTACTCATTACAAGCTTGGTAGTGTTGTTGTTTGTGCTATTGGTATGGGGAGGCAACCCTGCTGTGATAAACTTGGGGTGAAGAAAGGTCCATGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGTTGTTGGCGTGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGACTTGAAGAGAGGACTCCTCACACAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAAATTGCTGCCAGGTTACCCGGAAGAACAGACAACGAGATTAAAAATCATTGGAACACACATATCAAGAAAAAACTCCTGAAAATGGGTATTGATCCCGTCACTCATGAACCTCTGAATAAACAAGCAACATCTCAGGATAGTTCACCCTCCCCTTCAGAGCATTTGCCACAACCTGAGAATAACCTCGATCAGGTGAAGGAAACTGATGTGGTTCTCAACTCAGAGGAGAATTCAAGTTCATCCCAAGCTGAAAATTCTTCTGGGGATGACTCACTTTTGCTAGATAGCATTTGCAGTGACGATTCTCTTTTAAACACCCTGTGGCTGGATGAAACTCCTCTGATGGAAGCATTATGGGACACAACACCCAAACTAGAGAATAATACTAATAGTAACATGGGTTTGGTACCATCTTGGGAGGACAATTGTGCTTGGTTATTGGACTGTCAGGACTTCGGTATTCACGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAACGCACTGCATACCATAGAAATGAAGGACGAGGAGCATTAA 954 0.4403 MILLHIYVINNLGKKGRGLYIKVGGEWGFWVITHYKLGSVVVCAIGMGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQATSQDSSPSPSEHLPQPENNLDQVKETDVVLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNTLWLDETPLMEALWDTTPKLENNTNSNMGLVPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALHTIEMKDEEH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04245 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 107 IPR017930 -
Viun3g04245 317 FunFam MYB transcription factor 57 113 - -
Viun3g04245 317 SUPERFAMILY Homeodomain-like 57 154 IPR009057 -
Viun3g04245 317 SMART sant 112 160 IPR001005 -
Viun3g04245 317 SMART sant 59 109 IPR001005 -
Viun3g04245 317 PANTHER F14D16.11-RELATED 47 221 - -
Viun3g04245 317 Gene3D - 58 113 - -
Viun3g04245 317 MobiDBLite consensus disorder prediction 174 200 - -
Viun3g04245 317 FunFam MYB transcription factor 116 192 - -
Viun3g04245 317 Gene3D - 116 190 - -
Viun3g04245 317 Pfam Myb-like DNA-binding domain 117 157 IPR001005 -
Viun3g04245 317 Pfam Myb-like DNA-binding domain 60 107 IPR001005 -
Viun3g04245 317 ProSiteProfiles Myb-like domain profile. 55 107 IPR001005 -
Viun3g04245 317 CDD SANT 62 107 IPR001005 -
Viun3g04245 317 MobiDBLite consensus disorder prediction 208 227 - -
Viun3g04245 317 CDD SANT 117 158 IPR001005 -
Viun3g04245 317 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
Viun3g04245 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 162 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04245 Viun-Chr3 50150357 50152859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04245 47 296 MYB Transcription Factor Family AT4G22680 61.654 1.71e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g04245 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04245 K09422 - gmx:100786965 476.478