Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04236 ATGAGTTTCCTTCATTTCCTCCTTCTGTGTGCGTTGGTTGCACTTTGCAGTTCACACCTGGTTCGTGGAAATGCCGAGCTAAGAGCTCTGATGGACCTGAAAAAATCTCTTGACCCAGAGGACACGCTGCTTGGGTCGTGGACCAGTGATGGTGATCCATGCAGTGGTTCGTTCTTGGGGGTTGCGTGCAACCAGCATAACAAAGTGGCCAATATATCATTGCCAGGAAGAGGTCTTTCTGGTCGTGTCTCTCCAGCTGTGGCTGAACTCAGATGCTTGTCAGGTCTATACCTGCATTTCAACCACCTCTCTGGGGACATACCCAGAGAGATTGCAAATCTAACAGAATTGATGGATCTCTATCTCAACGTTAATAATCTATCCGGAAAAATTCCAACTGATATCGGGAACATGACTAGCCTCCGAGTGCTGCAGTTAGGCTATAACCAGTTAGAGGGGAACATACCCAAGGAACTGGGTTCGTTGAAGCAGCTTAACGCTATATCTTTGCAACATAACAAACTAACCGGTCAGATTCCACTATCCTTGGGTAGCTTGGAGAACCTAACGATGCTATATTTGAGCTCTAACAACTTCATTGGCATAATCCCTGCAACACTAGCTGATATTGCAAACTTGAAAGTTCTAGATATTCAAAACAATTCTCTTTCGGGGACCGTTCCTTCTGCATTGCAGAGATTAAGGGAAGGATTCAAAGGTGCAAACAACCCAGATCTCTGCGGAGTTGGGTTTTCTACTTTGAAAGCTTGCAACAGTGATAAAATATATGGCGTGGGTCAGATTAGTTCCCCAAATAAATCCATAAATAATAATCCCTCAGCAACTTTCTCGAATCCTGCAAATACCCACTTGAACTGTAGCCAGATCCATTGCTCAAAATCAGGAGGGTTTCTCCATCTTGTCATTGCAGCAAGTGTGACAACTACCATTATAACATTCTTAAGTTCTGGAATCTTCATGTTTGTCAGATACCGCCGCCAAAGGCAGAGGATTAGGAACACGTCCGAATGTTCTGAAAGTCAACCTAGTCCTTACCTGCCTAAAGATTTCTACAGAAGTTCATCTCCACTTGTTAATCTTGAGAATTACTACAGTGGTTGGGACTCAGTAGCTGATGGTCAAAATGCAAGTGGATTATCCCTCGAATATCTCAACCGTTTCAGATTTAATATCGATGAGATTGAATCAGCAACACAACACCTTTCCGAGGCCAATCTATTGGGTAAGAGCAAACTCTCAGCAGTCTATAAAGGTGTTCATAGAGACGGTTCTCTTGTGGCCATTAGAAGCATTAGCGTGACTTGCTGCAAAACCGAGGAAGATGAATTTTTGAAGGGGTTGATCCTATTAACCACTCTGAGACACGAAAATATCGTTAAGATGAAAGGTTTCTGTTACTCAAGGAGCAGAGGTGAATGGTATTTTGTCTATGACTTTGCCACCAGGGGTAATCTGTCTCAATATCTTGACAAGGAAGATGGAAGTGACAGTGTACTTGAATGGTCCAAGAGAGTTTCTATCATCAGGGGTATAGCAAAAGGTATTGGTTATTTGCACAGCAACGAAGCAAGCAAGCCTACAATAGTACACCAAAACGTTTCGGTTGAAAAGGTTATTCTGGACCATGAATTTAACCCCTTGATCATGGATGCTGGGCTCCCAAAGCTTCTTGCAGATGATGTAGTTTTCTCAGCTCTTAAAGCAAGTGCTGCAATGGGGTACCTTGCACCAGAATATATTACTACTGGGCGATTTACTGAGAAGAGTGACATATATGCATTTGGGGTTATTGTCCTTCAGGTTCTATCTGGAAAGGCATTGGTAGGGGGTTCAATCAGGGTTGCAGTTGAAGCTTTTAGATTTGAAGATTTTGTTGACACAAATCTGAAGGGAGATTATTCTAAGTCTGAAGCTGCAATTCTTTCAAAGCTTGCAATTGTGTGCACCCATGAAGTGCCAGAGCTAAGGCCAACCATGGTGGAGGTGATTCAAGAGCTGGCCATGCTTCCTCTCCATTCTTCATAA 2046 0.4316 MSFLHFLLLCALVALCSSHLVRGNAELRALMDLKKSLDPEDTLLGSWTSDGDPCSGSFLGVACNQHNKVANISLPGRGLSGRVSPAVAELRCLSGLYLHFNHLSGDIPREIANLTELMDLYLNVNNLSGKIPTDIGNMTSLRVLQLGYNQLEGNIPKELGSLKQLNAISLQHNKLTGQIPLSLGSLENLTMLYLSSNNFIGIIPATLADIANLKVLDIQNNSLSGTVPSALQRLREGFKGANNPDLCGVGFSTLKACNSDKIYGVGQISSPNKSINNNPSATFSNPANTHLNCSQIHCSKSGGFLHLVIAASVTTTIITFLSSGIFMFVRYRRQRQRIRNTSECSESQPSPYLPKDFYRSSSPLVNLENYYSGWDSVADGQNASGLSLEYLNRFRFNIDEIESATQHLSEANLLGKSKLSAVYKGVHRDGSLVAIRSISVTCCKTEEDEFLKGLILLTTLRHENIVKMKGFCYSRSRGEWYFVYDFATRGNLSQYLDKEDGSDSVLEWSKRVSIIRGIAKGIGYLHSNEASKPTIVHQNVSVEKVILDHEFNPLIMDAGLPKLLADDVVFSALKASAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKALVGGSIRVAVEAFRFEDFVDTNLKGDYSKSEAAILSKLAIVCTHEVPELRPTMVEVIQELAMLPLHSS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04236 681 Pfam Protein tyrosine and serine/threonine kinase 412 673 IPR001245 GO:0004672|GO:0006468
Viun3g04236 681 FunFam Protein NSP-INTERACTING KINASE 2 487 677 - -
Viun3g04236 681 SMART LRR_typ_2 138 162 IPR003591 -
Viun3g04236 681 SMART LRR_typ_2 186 209 IPR003591 -
Viun3g04236 681 SMART LRR_typ_2 90 114 IPR003591 -
Viun3g04236 681 SMART LRR_typ_2 210 233 IPR003591 -
Viun3g04236 681 SUPERFAMILY Protein kinase-like (PK-like) 384 676 IPR011009 -
Viun3g04236 681 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Viun3g04236 681 FunFam Protein NSP-INTERACTING KINASE 2 379 486 - -
Viun3g04236 681 SUPERFAMILY L domain-like 26 234 - -
Viun3g04236 681 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 674 - -
Viun3g04236 681 Gene3D Ribonuclease Inhibitor 23 302 IPR032675 -
Viun3g04236 681 Gene3D Transferase(Phosphotransferase) domain 1 488 676 - -
Viun3g04236 681 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
Viun3g04236 681 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Viun3g04236 681 ProSiteProfiles Protein kinase domain profile. 408 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g04236 681 Pfam Leucine rich repeat 188 235 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04236 Viun-Chr3 50049951 50052869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04236 7 521 Miscellaneous Gene Families AT4G22730 53.524 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Viun3g04236 PK_Tyr_Ser-Thr 4.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04236 - - gmx:100784155 1101.27