Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04219 ATGGAGTCAAGTGGCGGTGTTAGCAGCGGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGATTACCATGTAGCTCCGAGGACCGACAACCCAGCTCCCGCAAGCGGATCCACGACGCAAATTCCGGCGACGGCGGGGAGTGCTCCTCCGGCACAACCACAACTACCGCACACGGTGGCGATGGAAGCGTTGCCGGCGACGACGATGCCAGCTAAAAAGAAGAGAGGGCGTCCGAGAAAGTACGCACCGGACGGCTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGTGGAAAGATAAAACCAACGAGTTCCGTGAGCAAAGCCAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTCACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTGACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGCTCATTCATGCCCAGTGAAAGTGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGAGGAGTAGCTGGTTTATTAGTAGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAACAGAAGCCAAGAAAACAGAAACATGAAGTTATATCAAGTGTGACAGCAGCAGCAGTTGTTCCCATCTCCACTCTTGATCCAATACCAATTCTATCATCAGCAACTTCCATCCGCGGAGAAACTTGGTCTGCTATGCCAGCAGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCAGCAGGGTAA 996 0.5151 MESSGGVSSGGVTVVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSAPPAQPQLPHTVAMEALPATTMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTAAAVVPISTLDPIPILSSATSIRGETWSAMPAAEAKNKPADINVSLPAG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04219 331 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
Viun3g04219 331 MobiDBLite consensus disorder prediction 1 15 - -
Viun3g04219 331 CDD DUF296 146 237 IPR005175 -
Viun3g04219 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 280 IPR039605 GO:0003680
Viun3g04219 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Viun3g04219 331 Gene3D - 147 279 - -
Viun3g04219 331 MobiDBLite consensus disorder prediction 1 87 - -
Viun3g04219 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 263 - -
Viun3g04219 331 MobiDBLite consensus disorder prediction 32 48 - -
Viun3g04219 331 FunFam AT-hook motif nuclear-localized protein 1-like 147 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04219 Viun-Chr3 49886597 49891092 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04219 1 328 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.360 1.04e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04219 - - gmx:100794202 556.599