Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04216 ATGGATCCAATCACAGCACATGGTCACTCCCTTGCCCCTTCTTTCCACCCAAGAGATCTCCATCTGCACCAGCCGCAGCAGCACCAATTCCAAACCTTAAACCAACCCACCGACGACGAGAACAGCGGAAGCAGCAGCGCGCAGAAGAGGGAGCGCGAAGAGAACAACGGCAACAACAACGATGAAGGTGCAGGTGAGGCTGAGATAACAAGGAGACCTCGCGGGAGACCAGCCGGCTCCAAGAACAAACCCAAGCCACCCATTATCATCACTCGCGACAGCGCCAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGCTGCGACATCGTGGATAGCGTGTCTGAGTTCGCCAGGAAACGCCAGAGAGGGGTTTGCATCCTGAGTGGAACCGGCACAGTGACCAACGTCACTCTCAGGCAACCGGCTTCTTCCGGTGCGGTTGTCACTCTCCATGGAAGGTTCGAGATTTTGTCCCTGAGTGGATCTTTCCTTCCGCCGCCTGCGCCACCGGCTGCTTCCGGTTTGACCATTTACCTGGCCGGTGGGCAGGGACAGGTGGTGGGAGGAAGTGTGGTTGGGACGCTGGTTGCTTCGGGGCCTGTGGTGATCATGTCTGCTTCCTTCAGCAACGCTGCTTACGAGAGGCTTCCTTTGGAGGATGAAGACCCTTCGCTGCAAATGCAAGGAGGGTCAATTGGGTCACCCGGTGCAAGTGGTGTTGGTCAGTCACAGCTTCTTGGAGGAGGAGATGCAACTGCTCCACTTTTCCATGGTTTGCCTCCTAACCTTCTCAATTCTGTTCAAATGCAATCTGAGCCATTCTGGGCACCCAATCGCCCACCACACTTCTAG 858 0.5629 MDPITAHGHSLAPSFHPRDLHLHQPQQHQFQTLNQPTDDENSGSSSAQKREREENNGNNNDEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGCDIVDSVSEFARKRQRGVCILSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMSASFSNAAYERLPLEDEDPSLQMQGGSIGSPGASGVGQSQLLGGGDATAPLFHGLPPNLLNSVQMQSEPFWAPNRPPHF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04216 285 PIRSF ESCAROLA 15 284 IPR014476 GO:0003680
Viun3g04216 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Viun3g04216 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Viun3g04216 285 MobiDBLite consensus disorder prediction 224 244 - -
Viun3g04216 285 MobiDBLite consensus disorder prediction 229 243 - -
Viun3g04216 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 278 IPR014476 GO:0003680
Viun3g04216 285 CDD DUF296 99 166 IPR005175 -
Viun3g04216 285 MobiDBLite consensus disorder prediction 1 90 - -
Viun3g04216 285 Gene3D - 98 230 - -
Viun3g04216 285 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Viun3g04216 285 MobiDBLite consensus disorder prediction 44 75 - -
Viun3g04216 285 MobiDBLite consensus disorder prediction 24 43 - -
Viun3g04216 285 FunFam AT-hook motif nuclear-localized protein 98 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04216 Viun-Chr3 49833052 49835029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04216 27 282 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 58.214 3.75e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04216 - - gmx:100807581 442.965