Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04215 ATGAGTTCTTCTCAACATACTAACGGCACCAGCTACCCCACGTCAGAGCCCAAGCTCTGCGCCAATAACTGCGGTTTTTTCGGCACTCCCGAAAACGGAAACTTCTGTTCCAAATGCTACAAGCAACTTTGTGTCCAGGTGCCGCCTTCTGCAATAAACTCTCTCTTCTGCCAATCCGCGTCGCCGGCGCTTCTTGACGTTGTAAAGCCATCCTCTTCGGTGGAGCCGTCGCCGCCGTGCGCGGCTGAGCCTTCCAAACCCAAGAATCGGTGCGAGTGTTGCAACAAAAAAGTGGGTTTAACCGGGTTCGTGTGCAAGTGTGGGATCACTTTCTGCGGGGTGCACCGTTACCCGGAGAAGCACCAGTGCACCTATGACTTCAGGACTGCGGGGCGTGAAGCGATTTCTAAAGAAAATCCTATTGTAAAGGGTGATAAGGTTCAAAGGTTTTAG 453 0.5232 MSSSQHTNGTSYPTSEPKLCANNCGFFGTPENGNFCSKCYKQLCVQVPPSAINSLFCQSASPALLDVVKPSSSVEPSPPCAAEPSKPKNRCECCNKKVGLTGFVCKCGITFCGVHRYPEKHQCTYDFRTAGREAISKENPIVKGDKVQRF 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04215 150 PANTHER AN1-TYPE ZINC FINGER PROTEIN 17 149 - -
Viun3g04215 150 ProSiteProfiles Zinc finger A20-type profile. 14 48 IPR002653 GO:0003677|GO:0008270
Viun3g04215 150 Pfam AN1-like Zinc finger 91 126 IPR000058 GO:0008270
Viun3g04215 150 FunFam Zinc finger AN1-type containing 6 68 146 - -
Viun3g04215 150 Pfam A20-like zinc finger 19 41 IPR002653 GO:0003677|GO:0008270
Viun3g04215 150 SMART AN1_Zf_4 91 128 IPR000058 GO:0008270
Viun3g04215 150 Gene3D - 68 146 IPR035896 -
Viun3g04215 150 SUPERFAMILY AN1-like Zinc finger 81 145 IPR035896 -
Viun3g04215 150 Gene3D - 3 63 - -
Viun3g04215 150 ProSiteProfiles Zinc finger AN1-type profile. 85 131 IPR000058 GO:0008270
Viun3g04215 150 SMART A20_3 17 41 IPR002653 GO:0003677|GO:0008270
Viun3g04215 150 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04215 Viun-Chr3 49814972 49815439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04215 18 150 C2H2 Transcription Factor Family AT3G52800 37.580 3.93e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04215 - - vun:114175511 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04215 3 49814972 49815439 Viun3g04215 3 49814972 49815439 ECH