Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04214 ATGGGTTCTCAACAGAACTACGGCGCCAGCTACCCCACTTCGGAGCCCAAACTCTGCGCCAATAACTGCGGTTTCTTCGGCACTCCCGAAAACGGAAACTTCTGTTCTAAATGCTACAAGCAACTTTGTGTCCAGGTGCCGCCTTCTGCAATAAACTCTCTCTTACGTCTCTCCGCGCCTCCAGCGCTTCCTGACGCGGCAAAGCCATCCTCTTCGGCGGAGCAGTCGCCGCCGTGCGCGGCTGAGCCTTCCAAACCTAAGAATCGGTGTGGGTGTTGCAACAGAAAAGTGGGTTTAACCGGGTTCGTGTGCAAGTGTGGGACCACCTTCTGCGGGGTGCACCGTTACCCGGAGAAGCACCAGTGCACCTATGACTTCAAAACTGCGGGGCGTGAAGCGATTTCTAAGGAAAATCCTACGATAAAGGGTGAGAAGGTTCAACGGTTTTAG 450 0.5444 MGSQQNYGASYPTSEPKLCANNCGFFGTPENGNFCSKCYKQLCVQVPPSAINSLLRLSAPPALPDAAKPSSSAEQSPPCAAEPSKPKNRCGCCNRKVGLTGFVCKCGTTFCGVHRYPEKHQCTYDFKTAGREAISKENPTIKGEKVQRF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04214 149 MobiDBLite consensus disorder prediction 62 89 - -
Viun3g04214 149 Gene3D - 75 136 IPR035896 -
Viun3g04214 149 FunFam Zinc finger AN1-type containing 6 65 145 - -
Viun3g04214 149 ProSiteProfiles Zinc finger AN1-type profile. 84 130 IPR000058 GO:0008270
Viun3g04214 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 52 - -
Viun3g04214 149 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Viun3g04214 149 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 148 - -
Viun3g04214 149 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Viun3g04214 149 Pfam AN1-like Zinc finger 90 126 IPR000058 GO:0008270
Viun3g04214 149 SUPERFAMILY AN1-like Zinc finger 77 144 IPR035896 -
Viun3g04214 149 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Viun3g04214 149 Gene3D - 3 74 - -
Viun3g04214 149 SMART AN1_Zf_4 90 127 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04214 Viun-Chr3 49805151 49805685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04214 17 149 C2H2 Transcription Factor Family AT3G52800 36.943 4.61e-32 110