Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04200 ATGAACACATTTTCGCATGTACCTCCAGGCTTTCGGTTTCATCCCACCGATGAAGAGCTTGTAGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTAGATCTGTATAAGATTGAGCCATGGGATCTCCAAGAGTTATGCAAAATAGGAACAGATGAACAAAGTGACTGGTATTTCTTCAGTCATAAAGATAAGAAATACCCAACTGGAACTCGGACGAATAGAGCAACAAAAGCAGGATTTTGGAAAGCGACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCTTGATTGGCATGAGAAAAACTCTTGTGTTTTACAAAGGAAGAGCTCCGAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTCCTCCGGAAGAAGGCTGGGTTGTGTGCAGAGTGTTCAAGAAGCGAATGACTACAATGCAGAAAGTGGGAGAGTATGATCAGTCACCATGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATTTTGAATCCCCCAGACGCATTTCTCAGCCTTATGCATCATACCATCACCACCACCCATGCAAACCCGAGCTCATGGAATTGCAATACAACAACATCCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAACTAACTCACTCAGCACCCACTTTGAGTTGCAGCTCCGTTGTCCCTTTTGCCTATGAAACCAGCAACAACAAAAGCAACGGAAGCACCTTGCAGTTCTCATCACTCACTCAGGAAGAACAGATACAATACTGCCACCAACAGAGTCAAAATTCCCTCTACTGTACCAATGATAATGCGGTTGACCAAGTCACAGATTGGCGAGTGCTTGACAAATTTGTTGCTTCTCAGCTCAGTCACCACAACCAAGATGTTTCCAAGGAGACCAGTTATTCCAATGCACCTATTTTCCAAGTGGCTGAACAAATTTCTGTGGTAACCAATGGATCCAAAAAGGAGCAAATTTCCCAGGAATATGCTTCGACATCTACCTCCAGTTGCCAGATTGACCTGTGGAAGTGA 1089 0.438 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPPEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDFESPRRISQPYASYHHHHPCKPELMELQYNNIPHDAFLQLPQLESPKLTHSAPTLSCSSVVPFAYETSNNKSNGSTLQFSSLTQEEQIQYCHQQSQNSLYCTNDNAVDQVTDWRVLDKFVASQLSHHNQDVSKETSYSNAPIFQVAEQISVVTNGSKKEQISQEYASTSTSSCQIDLWK 362
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04200 362 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Viun3g04200 362 FunFam NAC domain-containing protein 16 160 - -
Viun3g04200 362 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Viun3g04200 362 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Viun3g04200 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 301 - -
Viun3g04200 362 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun3g04200 Viun-Chr3 49676234 49682116 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04200 1 362 NAC Transcription Factor Family AT1G12260 57.143 3.06e-140 400
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g04200 NAM 1.8e-37 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04200 - - gmx:100783529 667.151