Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04195 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAATAAGTCAAGGCTTCGAATGCATTCTAGTCTGCTAGCTTATTCCCAGCAAGATTCGCCAGTCTCTCCGGGGAAGTACTCAAGAAGCAATTCAAGGAAAAGTACAGGGAGTGTCGATGATGTGAAGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCTCCTCCAAGGAAGAAGCAACTGAAAGGGTCCAGTGTTCAGATTGCTTCAATTGACTTTGAGATTGAAGATTATTGTACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAAAATCGTTGACCTTGCTCAGAATAAGAAGATTGCAATGTTTCTAGACTATGACGGCACACTTTCACCGATTGTAGATGATCCCGATTGTGCCTTTATGTCCGAATCTATGCGAACAACTGTGAGAAGTGTGGCAACATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAACTAACAGAACTGTACTACGCTGGTAGTCATGGGATGGATATTATTGGCCCTGTCAGTGAAACTTTGTCCAAAAATCACCCTAGTTGTGTAATGTCTACAGACCATGAGGGAAAGGAAGTAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAGCCCTCGTCGAGATTACTAAAGATATAGAAGGCGCAAAAGTTGAAAACCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAGTAGTTGGGCAACGTGTCCATGATGTCTTGCAAAGTTACCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAGTCCGTCCTGTGGTTGACTGGAATAAAGGAAAAGCAGTTGAGTTTTTACTTGAATCTCTAGGATTTAATGATAGTGAGGATGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATAGAGGCTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCCTTCTACTCTCTCCGAGACCCCAATGAGGTCATGAAATTTCTCCAACTCTTGGTGAACTGGAAAAGACAAGAAAGAAAGCATGGGAAGATGTAA 1176 0.4252 MDLKSSHVSPVLTDPVPVNKSRLRMHSSLLAYSQQDSPVSPGKYSRSNSRKSTGSVDDVKSNGWLDAMKASSPPRKKQLKGSSVQIASIDFEIEDYCTWMLEYPSALDSFEKIVDLAQNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPSCVMSTDHEGKEVTLFQPAREFLPMVDEVFRALVEITKDIEGAKVENHKFCVSVHYRNVEENNWTVVGQRVHDVLQSYPRLRSTHGRKVLEVRPVVDWNKGKAVEFLLESLGFNDSEDVLPIYIGDDKTDEDAFKVLRESNRGYGILVSSVRKESNAFYSLRDPNEVMKFLQLLVNWKRQERKHGKM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04195 391 Gene3D - 211 391 IPR023214 -
Viun3g04195 391 Gene3D - 122 205 IPR023214 -
Viun3g04195 391 NCBIfam trehalose-phosphatase 120 379 IPR003337 GO:0003824|GO:0005992
Viun3g04195 391 SUPERFAMILY HAD-like 123 383 IPR036412 -
Viun3g04195 391 MobiDBLite consensus disorder prediction 32 59 - -
Viun3g04195 391 NCBIfam HAD-IIB family hydrolase 124 342 IPR006379 -
Viun3g04195 391 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 32 387 IPR044651 GO:0004805|GO:0005992
Viun3g04195 391 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Viun3g04195 391 MobiDBLite consensus disorder prediction 32 79 - -
Viun3g04195 391 FunFam Trehalose 6-phosphate phosphatase 122 211 - -
Viun3g04195 391 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Viun3g04195 391 FunFam Trehalose 6-phosphate phosphatase 229 388 - -
Viun3g04195 391 CDD HAD_TPP 123 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04195 Viun-Chr3 49555797 49561618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04195 109 375 Trehalose Biosynthesis Gene Families AT1G23870 26.241 1.12e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04195 K01087 - zju:107430298 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04195 3 49555797 49561618 Viun3g04195 3 49555797 49561618 ECH