Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04168 ATGACTTCCACTATGTTGTTGTTGGTTTTGTTCATCATGTTATGCATTTCACATCCCTCCTTCCAAATGCTACTCTTGCCACTTACACACACACTTTCGCAAGCTCAATTCAACACAACCCACCACCTCTTGAAATCCACCTCCGCCCGTTCCGCCGCCCGCTTCCGCCGCCAACTCTCCCTCCCCCTCTCACCGGGCAGCGACTACACTCTCTCCTTCAATCTGGGCCACCAGGCCCAGCCCATAACCCTCTACATGGACACAGGCAGTGACTTGGTATGGTTCCCCTGCGCCCCTTTCAAGTGTATTCTCTGCGAGGGAAAGCCCAACGAGCCCAACGCCTCTTCGCCACCCAACATCACCCGAAGCGTCGCCGTTTCCTGCAAGTCTCTCGCGTGCTCTGCAGCGCACAACTTAGCCTCCTCTTCCGATCTCTGCGCAATGGCTCGTTGTCCTCTGGAATCAATCGAAACCTCCGAGTGTGGCAATTTCAAGTGTCCACCGTTTTACTACGCCTACGGCGACGGAAGCTTAATCGCGCGTCTATACCGTGACTCGCTCGCTCTTTCTTCTCTGTCTCTTAGAAACTTCACCTTCGGTTGCGCTCACACAGCTCTAGCCGAACCTACCGGAGTCGCCGGTTTCGGCCGCGGTTTGCTCTCTCTCCCGGCGCAGCTAGCCACTCTGTCTCCTCATCTCGGAAACCGTTTTTCGTACTGCCTTGTTTCTCACTCGTTTGACTCTGAGCGAGTTCGAAAACCGAGTCCGCTCATTCTCGGCCGTTACGAGGAGAAGGAAAAGGAGAAGATCAGTGGCGGTGGAATGGTTGAGTTTGTGTACACGCCTATGCTTGAAAACCCTAAGCATCCTTATTTTTATATCGTTAGCTTAACCGGAATCTCTGTAGGGAAGAGGACTATTCCCGCGCCGGAGATGCTGCGGCGGGTGAACCATCGAGGAGATGGTGGGGTTGTTGTGGATTCCGGCACGACGTTCACGATGTTGCCGGAGGGGTTTTACAACTCGGTGGTTGACGAGTTTGACAGCCGAGTCGGGCGAGTCAACCAGCGCGCGCGGAAGATTGAGGAAAAAACTGGACTCGCGCCGTGCTATTATTTGAATGCGGTGGCGGAAGTTCCTGTTGTGACGCTGCGTTTTGGTGGAGGGAATTCCAGTGTGGTGCTGCCTAGGAAGAATTATTTTTACGAGTTTTTGGACGGTAGCGATGAGACGAAGGGGAAGAGGAGGGTGGGGTGTTTGATGTTGATGAACGGTGGAGATGAGGGTGAGCTGAGCGGTGGGCCAGGGGCCACACTCGGGAATTACCAGCAGCAAGGATTTGAGGTTGTGTATGACCTGGAAGAGAAGCGCGTGGGATTTGCGAAGAGGCATTGCGCGTCGCTCTGGGAGAGACTGAATCGGGACAAGAACTAG 1434 0.5425 MTSTMLLLVLFIMLCISHPSFQMLLLPLTHTLSQAQFNTTHHLLKSTSARSAARFRRQLSLPLSPGSDYTLSFNLGHQAQPITLYMDTGSDLVWFPCAPFKCILCEGKPNEPNASSPPNITRSVAVSCKSLACSAAHNLASSSDLCAMARCPLESIETSECGNFKCPPFYYAYGDGSLIARLYRDSLALSSLSLRNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPHLGNRFSYCLVSHSFDSERVRKPSPLILGRYEEKEKEKISGGGMVEFVYTPMLENPKHPYFYIVSLTGISVGKRTIPAPEMLRRVNHRGDGGVVVDSGTTFTMLPEGFYNSVVDEFDSRVGRVNQRARKIEEKTGLAPCYYLNAVAEVPVVTLRFGGGNSSVVLPRKNYFYEFLDGSDETKGKRRVGCLMLMNGGDEGELSGGPGATLGNYQQQGFEVVYDLEEKRVGFAKRHCASLWERLNRDKN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04168 477 ProSiteProfiles Peptidase family A1 domain profile. 69 461 IPR033121 -
Viun3g04168 477 SUPERFAMILY Acid proteases 64 470 IPR021109 -
Viun3g04168 477 CDD pepsin_A_like_plant 69 465 IPR034161 -
Viun3g04168 477 PANTHER ASPARTYL PROTEASES 6 459 IPR001461 GO:0004190|GO:0006508
Viun3g04168 477 FunFam Probable aspartyl protease At4g16563 59 259 - -
Viun3g04168 477 Gene3D Acid Proteases 60 260 IPR021109 -
Viun3g04168 477 FunFam aspartic proteinase nepenthesin-1 267 470 - -
Viun3g04168 477 Gene3D Acid Proteases 272 470 IPR021109 -
Viun3g04168 477 Pfam Xylanase inhibitor N-terminal 69 260 IPR032861 -
Viun3g04168 477 Pfam Xylanase inhibitor C-terminal 293 461 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04168 Viun-Chr3 49345017 49347226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04168 35 468 Miscellaneous Gene Families AT1G77480 25.270 2.80e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04168 - - gmx:100805699 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04168 3 49345017 49347226 Viun3g04168 3 49345017 49347226 ECH
Viun3g04168 3 49345017 49347226 Viun9g01578 9 23051640 23054291 ECH
Viun2g02430 2 31077518 31079564 Viun3g04168 3 49345017 49347226 PCT