Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04163 ATGGCTTCTCTCTCCATCTTCCAAATGTTTCTGCTTTTCAGTTCTTGCATATTATTATTGCATGCAACAACTGTGACATGCACAACCTACCGGGTAATCACCGTCGACATTAACGGCGGAGGCCATTTCCGATCAGTCCAAGCCGCCGTCAATGCCGTCCCGGACAACAACACAATGAACGTCGTTATTCAGATAAGCCCCGGATATTACATAGAGAAAGTGGTAGTGCCCGTGACGAAGCCGTACGTTACATTCGAAGGAGCGGGAAGAGATGTGACGGTGATAGAATGGCATGACAGGGCCAGTGACCCTGGTCCCAACGGCCAACAATTGCGTACTTACAGAACAGCTTCTGTTACAGTTTTTGCCAACTTTTTCTCTGCTAAGAATATCAGCTTCAAGAACACTTCTCCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATTTCCGGGGACAAAGCTTACTTCTCCGGCTGCGGGTTCTACGGTGCACAAGACACTCTCTGCGACGATGCTGGCCGTCATTACTTCAAAGAATGTTACATTGAGGGTTCCATCGATTTCATTTTTGGGAATGGCAGGTCTATGTACAAGGATTGCAGGCTACACTCAATTGCCACGAGGTTTGGGTCAATCGCAGCCCAAGATAGGAGATCCCCACACGAGAAAACAGGCTTCGCATTCGTACGGTGCAAGGTGACAGGAACAGGCCCAATTTATGTGGGCCGTGCAATGGGCCAGTACTCTAGGATTGTCTACGCTTACACCTACTTCGACGACATAGTTGCACATGGTGGTTGGGATGATTGGAACACTTCCTACAATAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGTGCTGCGGCTATACGTGGAGTCCCATTAGCCCAAGAGCTAGATTTTGAATCTGCCCATCCATTCCTGGTCAAGAGTTTTGTCAATGGGAGACACTGGATCGCACCCTCTGATGCTTAG 1002 0.498 MASLSIFQMFLLFSSCILLLHATTVTCTTYRVITVDINGGGHFRSVQAAVNAVPDNNTMNVVIQISPGYYIEKVVVPVTKPYVTFEGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANFFSAKNISFKNTSPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRRSPHEKTGFAFVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWNTSYNNKTVFFGVYKCWGPGAAAIRGVPLAQELDFESAHPFLVKSFVNGRHWIAPSDA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04163 333 Pfam Pectinesterase 33 324 IPR000070 GO:0030599|GO:0042545
Viun3g04163 333 SUPERFAMILY Pectin lyase-like 28 330 IPR011050 -
Viun3g04163 333 Gene3D - 27 332 IPR012334 -
Viun3g04163 333 ProSitePatterns Pectinesterase signature 2. 187 196 IPR033131 -
Viun3g04163 333 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 21 329 - -
Viun3g04163 333 FunFam Pectinesterase 28 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04163 Viun-Chr3 49279165 49282809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04163 21 333 Carbohydrate Esterase AT5G47500 76.115 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04163 - - gmx:100796327 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04163 3 49279165 49282809 Viun3g04163 3 49279165 49282809 ECH
Viun2g02426 2 31032957 31035682 Viun3g04163 3 49279165 49282809 PCT