Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04156 ATGGACAATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCAGCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCATCTCGCTTCTCTCCCTCTTCCCCCAAAGCCTCAAACTTTAACTCACTCCTCCTTCACTTATTCCTCTTCCTCGGACTCTGAACAAGAACACCTCAAAGAACAAGATTCTCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGACCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAGCGATCCAAGAGGAACCGGAAATCCGCCATGCTCAAGCTCAGCTTCGTCGTCTCCACGCCTCTCATCACCGAACCCGAACCTGTCAGTTCAGTCTCCGACACCTCCCCAGAGGAAGACGTCGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCACCAATGCAGGTCCACCGCAGAGATCAAAGAGGCGCTGCACGGGATCAGAGTCCAAGCTCAAGAAACTCCGCGGCAAGTGTCTCTGTCACACTTGCGGCAAAGCCTTTCGATCCTCTCGAGCCCTGGGGAGTCACAGAACCATTTGTTGCCGTCAAGAGGAAGCTCAACCTCAAACTCAAACTCAGAATCAAAACAACAACAACAATAGTATTAAGGTTTTCGAATGTCCCTTTTGTTACAAGGTTTTCGGCTCTGGTCAAGCTCTGGGTGGACACAAGAGATCTCACCTAATCCCTTCATCATCTTCAACCGTTAACGATTCCCTTAAATTCAAACAGACTTTCATAGATCTCAACATGCCGGCGCAGCCGGAAGAGGATGACCTTAGTGTTGTCTCTGATGCCTGA 861 0.5017 MDNRHKCKLCSRSFSNGRALGGHMKAHLASLPLPPKPQTLTHSSFTYSSSSDSEQEHLKEQDSLSYALRENPKKTFRVTDPEDRESETESKNPTRQRSKRNRKSAMLKLSFVVSTPLITEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVTNAGPPQRSKRRCTGSESKLKKLRGKCLCHTCGKAFRSSRALGSHRTICCRQEEAQPQTQTQNQNNNNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAQPEEDDLSVVSDA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04156 286 Pfam C2H2-type zinc finger 4 29 - -
Viun3g04156 286 Pfam C2H2-type zinc finger 224 248 - -
Viun3g04156 286 Pfam C2H2-type zinc finger 180 197 - -
Viun3g04156 286 Gene3D Classic Zinc Finger 175 247 - -
Viun3g04156 286 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Viun3g04156 286 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 286 IPR044303 GO:0006355
Viun3g04156 286 SUPERFAMILY beta-beta-alpha zinc fingers 3 30 IPR036236 -
Viun3g04156 286 SMART c2h2final6 178 198 IPR013087 -
Viun3g04156 286 SMART c2h2final6 5 27 IPR013087 -
Viun3g04156 286 SMART c2h2final6 225 247 IPR013087 -
Viun3g04156 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 247 IPR013087 -
Viun3g04156 286 MobiDBLite consensus disorder prediction 53 95 - -
Viun3g04156 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Viun3g04156 286 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Viun3g04156 286 SUPERFAMILY beta-beta-alpha zinc fingers 178 247 IPR036236 -
Viun3g04156 286 MobiDBLite consensus disorder prediction 36 52 - -
Viun3g04156 286 MobiDBLite consensus disorder prediction 28 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04156 Viun-Chr3 49230124 49231632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04156 5 283 C2H2 Transcription Factor Family AT3G60580 37.417 6.44e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g04156 zf-C2H2_6 3.4e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02404 2 30996928 30998043 Viun3g04156 3 49230124 49231632 PCT