Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04132 ATGGGTGCTTACAAGTATGTCTCGGAGCTCTGGCGCAAGAAGCAGTCCGATGTTATGAGATTCTTGCAGCGGGTGAGGTGTTGGGAATACCGCCAGCTGCCATCAATTGTTCGTCTGACAAGGCCTACTCGCCCAGACAAGGCTCGCCGCTTGGGTTACAAAGCTAAGCAGGGTTACGTGGTTTACCGTGTGCGTGTCAGGAGGGGTGGCAGGAAGAGACCAGTTCCCAAAGGTATTGTTTACGGTAAGCCAACCAACCAAGGTGTTACTCAATTGAAGTTTCAGCGCAGCAAGAGGTCCGTTGCTGAAGAGCGAGCTGGAAGGAAGTTGGGTGGCCTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCAACCTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCTCACAGTGCTATAAGAAATGATCCAAGAATCAACTGGCTCTGTAACCCAGTCCATAAGCACAGGGAACTTCGTGGCCTTACTTCTGCTGGGAAAAGTAACAGGGGTTTACGTGGCAGAGGACATCTCTACCACAAAAATCGCCCATCACGCAGGGCAACCTGGAAGAGAAACAACACACTTTCTCTTCGTCGTTACCGCTGA 615 0.5024 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHSAIRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKNRPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04132 204 FunFam Ribosomal protein L15 1 204 - -
Viun3g04132 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Viun3g04132 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Viun3g04132 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Viun3g04132 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Viun3g04132 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Viun3g04132 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Viun3g04132 204 MobiDBLite consensus disorder prediction 164 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04132 Viun-Chr3 49114249 49116501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04132 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.176 4.70e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04132 K02877 - gmx:100306052 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02382 2 30887214 30889230 Viun3g04132 3 49114249 49116501 PCT