Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04125 ATGGCACCAAGGATCAATGATGCCACACACAACAGATCAGCAATGAACAGAGGTTCATGGACCCCAGAAGAAGACACAAAGCTTGCCCAGTGCATTGAAATTCATGGTGCAAAGAGGTGGAAGACTATTGCAGTTAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCACATGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCCGGTAGGCTTCCGGGACGAACAGACAATGAAATAAAGAATTATTGGAATTCTCATTTGTGCAAAAAGGTGAATCAGAGAGAGGAGAGACCAGAATCTTCAACAACACACGAAATTGTTTTGCAGAATGAGAATGGTGGGGACAAAGTTGCAGTGTCAGAGAAGGAGGTTGGAAGCAACGAAAGTGGTAACTTAGATGTCACTTTCGACATTGACGAGTTTTTCAACTTCTCTGAGGAATCGTGTGGGTTAGATTGGCTGAACAAGTACTTGGAACTTGACCACATTCCTCATACCACCACACACTCTTAA 597 0.4255 MAPRINDATHNRSAMNRGSWTPEEDTKLAQCIEIHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISHEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQREERPESSTTHEIVLQNENGGDKVAVSEKEVGSNESGNLDVTFDIDEFFNFSEESCGLDWLNKYLELDHIPHTTTHS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04125 198 CDD SANT 74 115 IPR001005 -
Viun3g04125 198 FunFam Transcription factor TT2 73 142 - -
Viun3g04125 198 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Viun3g04125 198 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Viun3g04125 198 Gene3D - 8 70 - -
Viun3g04125 198 CDD SANT 19 64 IPR001005 -
Viun3g04125 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Viun3g04125 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Viun3g04125 198 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04125 198 Gene3D - 73 141 - -
Viun3g04125 198 SMART sant 16 66 IPR001005 -
Viun3g04125 198 SMART sant 69 117 IPR001005 -
Viun3g04125 198 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Viun3g04125 198 FunFam MYB-related transcription factor 16 69 - -
Viun3g04125 198 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Viun3g04125 198 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Viun3g04125 198 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 11 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04125 Viun-Chr3 49061891 49063011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04125 12 128 MYB Transcription Factor Family AT5G52600 65.254 3.55e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g04125 Myb_DNA-binding 9.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04125 K09422 - gmx:100799575 336.65