Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04122 ATGGACATGGAAGAATCAAACACCATGGAAACACAACTTCAACCAACCACCTCCTCCTCCTCCTCCTCCTCCTCCGACCAACAACAACAACAACAACCCACAACCAAGGACAAAAAAACAAAGAAAAACAACGTTAACACCAATCATACCAACCACCCAACGTACAGAGGAGTGCGCATGCGCCAATGGGGCAAATGGGTATCCGAAATCAGAGAGCCCAGGAAGAAGTCAAGAATTTGGCTTGGAACTTTTCCCACGCCGGACATGGCGGCGCGAGCCCACGACGTGGCGGCTCTCACCATCAAAGGCACCTCCGCCTTCCTCAATTTCCCCGAATTAGCCGCCGACCTGCCCCGCCCGGCCACCAACTCCCCCAAGGATATCCAACTGGCCGCCGCCAAAGCCGCCGCCTTGGATTTCCGCCCTCGGAGCCATGAAGCCGAGTCCGAGCTGAGCCGAGGCGGCTCCATTTCCAATTCTTCATCGAATTCGTCGTTGAACAGTGAGGATGACACATTCATGGACCTTCCCGATCTCTCGCCGGACTTGAGCCATGGAGTCGATGAGTTTCATTATTCCTCGGCTTGGCTTGTAGCCGGCCCCGAACTGGGGTTTCGGCTCGAAGAGCCTTTTCTTTGGGAATCCTATTAA 651 0.5453 MDMEESNTMETQLQPTTSSSSSSSSDQQQQQQPTTKDKKTKKNNVNTNHTNHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGTSAFLNFPELAADLPRPATNSPKDIQLAAAKAAALDFRPRSHEAESELSRGGSISNSSSNSSLNSEDDTFMDLPDLSPDLSHGVDEFHYSSAWLVAGPELGFRLEEPFLWESY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04122 216 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Viun3g04122 216 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Viun3g04122 216 MobiDBLite consensus disorder prediction 1 59 - -
Viun3g04122 216 MobiDBLite consensus disorder prediction 1 34 - -
Viun3g04122 216 MobiDBLite consensus disorder prediction 139 174 - -
Viun3g04122 216 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Viun3g04122 216 MobiDBLite consensus disorder prediction 151 171 - -
Viun3g04122 216 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Viun3g04122 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 182 - -
Viun3g04122 216 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Viun3g04122 216 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Viun3g04122 216 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Viun3g04122 216 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Viun3g04122 216 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04122 Viun-Chr3 49015315 49016620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04122 52 212 AP2-EREBP Transcription Factor Family AT2G44940 51.269 1.68e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g04122 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04122 - - vum:124847320 318.161