Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04120 ATGACCCGACGTTGCTCCCATTGCAGCCACAATGGGCACAATTCCAGGACCTGCCCCAATCGCGGAGTTAAGCTCTTCGGAGTCCGATTAACCGACGGGTCGATCCGGAAGAGTGCTAGTATGGGTAATCTCACCCATTATGCTGGTTCCGGGTCCGGACCTCTCCATGCGGGGTCAAACAACCCGGGTTCTCCTGGTGAAACCCCCGATCACGCTACCGCGGCCGATGGTTACGCCTCCGAGGACTTCGTTCCCGGTTCTTCTTCGAGCTCCCGTGAAAGAAAGAAGGGTGTTCCGTGGACTGAGGAGGAACATAGAATGTTTTTACTCGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATAACAAGGACACCTACTCAAGTGGCTAGTCATGCACAAAAATATTTCATCAGGCAAAGCAATGTGTCCAGGCGGAAGAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCAGCTGACACTGCAATGGTACAGCAAGACTTCTTGTCAGCTAATCAGTTACCGGTTGAAACAGAAGGCAATAACCCCTTGCCTGCGCCTCCTCCCCTTGACGAAGAGTGTGAATCCATGGATTCCACAAACTCAAATGATGGAGAACCTGCCCCATCAAAGCCTGAAAACACACAATCATCTTATCCAGTCTTATATCCTGCATACTATTCTCCAGTGTTCCCATTTCCTCTTCCCTATTGGTCAGGATACAGTCCAGAGCCCGCCAAGAAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATCTCAAAACTGAGTTTAGGGGAGTCTATTGGGGATTCAGGTCCCTCCACCCTGTCTCTTAAACTTCTTGAAGAAGGACCCTCGAGACAGTCAGCTTTCCATGCAACACCAACATGTGGCAGTTCAAATATGAATGGCAGTGCCATCCATGCAGTTTAA 1002 0.494 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPLHAGSNNPGSPGETPDHATAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVITRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADTAMVQQDFLSANQLPVETEGNNPLPAPPPLDEECESMDSTNSNDGEPAPSKPENTQSSYPVLYPAYYSPVFPFPLPYWSGYSPEPAKKETHEVLKPTAVHSKSPINVDELVGISKLSLGESIGDSGPSTLSLKLLEEGPSRQSAFHATPTCGSSNMNGSAIHAV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04120 333 FunFam transcription factor MYB1R1 98 149 - -
Viun3g04120 333 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Viun3g04120 333 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Viun3g04120 333 Gene3D - 98 150 - -
Viun3g04120 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Viun3g04120 333 SMART sant 96 146 IPR001005 -
Viun3g04120 333 PANTHER TRANSCRIPTION FACTOR KUA1 3 271 - -
Viun3g04120 333 MobiDBLite consensus disorder prediction 209 225 - -
Viun3g04120 333 MobiDBLite consensus disorder prediction 44 101 - -
Viun3g04120 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Viun3g04120 333 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g04120 333 MobiDBLite consensus disorder prediction 184 225 - -
Viun3g04120 333 CDD SANT 99 144 IPR001005 -
Viun3g04120 333 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Viun3g04120 333 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04120 Viun-Chr3 48958534 48964239 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun3g04120 Myb_DNA-binding 6.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04120 - - ccaj:109807943 650.973