Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04117 ATGATGGTTCAAAAGGAAGATCTGGGTTTGAGTCTAAGCCTCAACTTCCGTCACAATATACCCAATCCTCAACATCTTACTCTCATCTCCTCCTCTACTCATTCATCTTCCCCTTCACCTTCACCTTCAAATCCTTTTAAACCCTCTTGGAACGACGCTTTCGATCGAAACTCGGACACATGCAGAGGCGAAACCCGATCGTTCCTGCGCGGAATCGACGTGAATCGGTTACCCTCGGGCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTTTCGAGCGTGAGCGGAAAGCGAAGCGAGCGAGAACCCAACGGTGAAGAACACGACATGAACAGAGCCTGTTCCCGCGGAATCAGCGACGAAGAAGACGGCGAAACCTCAAGGAAAAAACTCAGACTCTCCAAAGACCAATCGGCTATTCTGGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGAAGCAAAAGCTGGCACTGGCAAAACAGCTAGGCCTTCTACCAAGACAAGTTGAGGTGTGGTTCCAGAACCGAAGAGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAGGTGTTGAAAAGGTGTTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTGAAACTCTCCCCTCAGTTTTACATGCAAATGACTCCTCCCACCACACTCACCATGTGCCCTTCTTGCGAGCGGGTGGCTGTGCCGTCGTCCGCCGTTGATGCCGCCGCGCGTCATCATCCGATGGGCCAGGCCCATGCCCACAGCCGGCCCATGGGCATGGGCCCGTGGGGTTCGGCTGCTTCCATTCCGCACCGGGGCTTTGATGGTTTTCACCACTGA 885 0.5322 MMVQKEDLGLSLSLNFRHNIPNPQHLTLISSSTHSSSPSPSPSNPFKPSWNDAFDRNSDTCRGETRSFLRGIDVNRLPSGVDMEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMNRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAAARHHPMGQAHAHSRPMGMGPWGSAASIPHRGFDGFHH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04117 294 MobiDBLite consensus disorder prediction 25 56 - -
Viun3g04117 294 MobiDBLite consensus disorder prediction 82 138 - -
Viun3g04117 294 Gene3D - 137 187 - -
Viun3g04117 294 FunFam Homeobox-leucine zipper protein 18 120 194 - -
Viun3g04117 294 SMART HOX_1 131 193 IPR001356 GO:0003677
Viun3g04117 294 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Viun3g04117 294 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Viun3g04117 294 MobiDBLite consensus disorder prediction 88 103 - -
Viun3g04117 294 PRINTS Lambda-repressor HTH signature 160 169 IPR000047 GO:0003677
Viun3g04117 294 PRINTS Lambda-repressor HTH signature 169 185 IPR000047 GO:0003677
Viun3g04117 294 CDD homeodomain 133 190 IPR001356 GO:0003677
Viun3g04117 294 MobiDBLite consensus disorder prediction 25 58 - -
Viun3g04117 294 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Viun3g04117 294 MobiDBLite consensus disorder prediction 104 138 - -
Viun3g04117 294 Pfam HD-ZIP protein N terminus 2 107 IPR006712 GO:0005634
Viun3g04117 294 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Viun3g04117 294 SUPERFAMILY Homeodomain-like 121 190 IPR009057 -
Viun3g04117 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 259 - -
Viun3g04117 294 Coils Coil 188 225 - -
Viun3g04117 294 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04117 Viun-Chr3 48871791 48873670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04117 1 290 Homeobox Transcription Factor Family AT5G47370 60.726 2.47e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun3g04117 HD-ZIP_N 7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04117 K09338 - gmx:100787231 474.552