Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04114 ATGCATATAGAGGAATTGAAGGGGGCTGACGCAGAAGAAGGTGAGGAGGAAAGAGGGTTGACGCTTGTGGGTTATGATGCAAAGAGGGTGTTGGTTGGAGCGGGTGCTCGTGTGCTATTCTACCCAACCCTTTTTTACAATGTTGTCAGGAATAAGATTCAGGCTGATTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCACACTTGAAGGAGCTTGGTGTTCGTGCGGTCATCACATTGAATGAGTCATATGAAACTTTGGTTCCGACAACATTATATTATACTCACGGAATTAACCACTTAGTGATCCCTACTAGAGATTACTATTTTGCTCCTTCATTGCGTGACATACAACGTGCTGTGAACTTCATACATGAAAATGCATTATCTGGACGCACTACATATGTGCATTGCAAAGCTGGACGCGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACTCCTGATGCTGCATATGCTTATGTGAAATCAATTCGACCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGTTGTCCAAGAATACTACAACCATATTATGGTGAGGAGGGCAGTTGGATGTGCTCCTTCAACCAATCTATTGGTAAAGGCTTCTGAAGGGGCAATAGGTTCACAAGATCTTGTGATATTTGATGACAGTTCTGTAGTCATGGTAACTGGATCAGATTTAGAAGGTTACAACCCAAGTAATGAATCAAGAACTGTGGCAAGTGAAATATGGGCAGATTTAAGTGTTGTGTATCGTGTAAGAGTTGCGGGAGAAGCGGCATTTCAGAGAATATCATGCCTTTGGCTACGATATGGTACTACTAACCACAATACTTTTACTGCAAAACCAAGCAATCGTCACATTGGAGAAATTAATGTTGATATCCACATGTACTGA 960 0.4198 MHIEELKGADAEEGEEERGLTLVGYDAKRVLVGAGARVLFYPTLFYNVVRNKIQADFRWWDKVDEFILLGAVPFPIDVPHLKELGVRAVITLNESYETLVPTTLYYTHGINHLVIPTRDYYFAPSLRDIQRAVNFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDAAYAYVKSIRPRVLLASSQWQVVQEYYNHIMVRRAVGCAPSTNLLVKASEGAIGSQDLVIFDDSSVVMVTGSDLEGYNPSNESRTVASEIWADLSVVYRVRVAGEAAFQRISCLWLRYGTTNHNTFTAKPSNRHIGEINVDIHMY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04114 319 CDD PTPMT1 59 203 IPR044596 GO:0004721
Viun3g04114 319 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Viun3g04114 319 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Viun3g04114 319 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Viun3g04114 319 FunFam Dual specificity phosphatase domain protein 59 207 - -
Viun3g04114 319 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 203 IPR029021 -
Viun3g04114 319 Pfam Dual specificity phosphatase, catalytic domain 79 202 IPR000340 GO:0008138|GO:0016311
Viun3g04114 319 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 290 - -
Viun3g04114 319 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Viun3g04114 319 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04114 Viun-Chr3 48856079 48859776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04114 1 319 Protein tyrosine phosphatase (PTP) family AT2G35680 56.560 1.48e-124 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04114 - - gmx:100790413 517.309