Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04111 ATGGCCAACGCAGCTGAAGTTTCAGCTTTGAATCGCATCAAGTTGCATCTTTTAGGTGAACTCTCTCCACTCGCCACTCCCCAAAATAAACAACCTTCTTCCCAATTTAATGAAACCAATAACAGCCCTTCTCAATCTTCTTCCTCTGATTCTTGCCTCTCCTTCGATCACTACCTCACTGAGCTCCTTGAACCTGAAATTCAATTACCCCTTTTCGAATTCGACTCCAAACCCCAAATAATCGACCTCGACACCCCGAAACCCCTCACATCGGTTCACAAGAAACCCCAATCAAATCGTAAACCTTCGCTGCAAATCTCTCTCCCCAAGAAGACCGAGTGGATCCAATTTGGGAACCCGGATCCCAACCCGGCTGTGGTCTTGCCGGAGAACCAGCCGGAGAAGAAGCACTACAGAGGAGTCCGGCAGCGGCCTTGGGGGAAGTTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACCGCCATCGAGGCTGCCAAGGCCTACGACCGCGCTGCCTTCAGGCTCCGCGGCTCAAAGGCCATCCTCAACTTCCCGCTCGAAGTAAGCGCGGTGGAGGAGACCACCGACGCCGAGGGCGAGAGGAAGCGGCGGCGCCAGGAGGAGGAGGAGGTAGAGGAAGTGAAGCCGGTGGTGAAGAAGGAGAAAACGACGGAACAGGAGGTGAACTGTTTTAGGGAGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGATAGTGATGTGAAGGAGATTTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCTCTTCCGGCTTTTGGATTATCACAACTCATGGTTGTGTGA 858 0.542 MANAAEVSALNRIKLHLLGELSPLATPQNKQPSSQFNETNNSPSQSSSSDSCLSFDHYLTELLEPEIQLPLFEFDSKPQIIDLDTPKPLTSVHKKPQSNRKPSLQISLPKKTEWIQFGNPDPNPAVVLPENQPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEVSAVEETTDAEGERKRRRQEEEEVEEVKPVVKKEKTTEQEVNCFREMPLTPSMWTGFWDSDVKEIFNVPPLSPLSPLPAFGLSQLMVV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04111 285 SUPERFAMILY DNA-binding domain 137 197 IPR016177 GO:0003677
Viun3g04111 285 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Viun3g04111 285 PANTHER DNA-BINDING DOMAIN 51 218 IPR044808 GO:0003700|GO:0009873
Viun3g04111 285 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Viun3g04111 285 FunFam Ethylene-responsive transcription factor 2 136 197 - -
Viun3g04111 285 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Viun3g04111 285 MobiDBLite consensus disorder prediction 202 228 - -
Viun3g04111 285 PRINTS Ethylene responsive element binding protein signature 177 197 IPR001471 GO:0003700|GO:0006355
Viun3g04111 285 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Viun3g04111 285 MobiDBLite consensus disorder prediction 24 50 - -
Viun3g04111 285 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700|GO:0006355
Viun3g04111 285 MobiDBLite consensus disorder prediction 204 228 - -
Viun3g04111 285 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04111 Viun-Chr3 48820170 48821250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04111 1 285 AP2-EREBP Transcription Factor Family AT5G47230 50.987 2.66e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g04111 AP2 6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04111 K09286 - gmx:100800453 374.015