Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04110 ATGTACGGACACAGTAGTACATACGAATCAGATTTGGCACTCTATTCGATTCGCCGCCACTTGCTCGGCGAGTCCGAATCAATATTCGGAGCACCCGCATGTGCATCGGGTCGGGCTTCCAGTGTCAGCTTATTATACTCCTGTTTGAGCGACAATTGGGGTGACCTTCCGTTAAAAGAGGATGATTCCGAAGATATGGTGCTCTACGGCGTGCTCCGTGACGCCGTTAACGTGGGGTGGGTCCCATCTCTTGAGGCCGGGTCGCCCGATACAGTGTTGTCGGGTTTTCCTACGGATTTCACGGTGAAGCTGGAACCGGACGTTATGCCGACGGTGACGAGTTCGCCTCCTAGGACAGCGGTGGTGAAGCAGGAGAAGCAAGCTTCTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGGCAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGAGACCCGGCGAAAAACGGAGCGCGGGTTTGGCTGGGAACGTTTGAGACCGCCGAGGATGCTGCGTTAGCTTACGACCGTGCCGCCTACCGTATGCGAGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGGGTTAACTCCGGCGAGCCCGACCCGGTGAGGGTGACTTCGAAGCGGTCTTCATCGCCGGAAAGTGGGGCGGGTCCGGCGAAGAAGAAGAAAGTGGGGGGGTCCGGGCAAGTGGGAAGTCAAGTGGCGGAGTGTACACGTGGCGAAGAATTATTGGTGAGATGA 747 0.5837 MYGHSSTYESDLALYSIRRHLLGESESIFGAPACASGRASSVSLLYSCLSDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPDTVLSGFPTDFTVKLEPDVMPTVTSSPPRTAVVKQEKQASPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPESGAGPAKKKKVGGSGQVGSQVAECTRGEELLVR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04110 248 MobiDBLite consensus disorder prediction 108 137 - -
Viun3g04110 248 FunFam Ethylene-responsive transcription factor 2 134 194 - -
Viun3g04110 248 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Viun3g04110 248 MobiDBLite consensus disorder prediction 197 235 - -
Viun3g04110 248 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Viun3g04110 248 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Viun3g04110 248 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Viun3g04110 248 SUPERFAMILY DNA-binding domain 135 195 IPR016177 GO:0003677
Viun3g04110 248 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Viun3g04110 248 PANTHER DNA-BINDING DOMAIN 116 216 IPR044808 GO:0003700|GO:0009873
Viun3g04110 248 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Viun3g04110 248 Gene3D AP2/ERF domain 134 196 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04110 Viun-Chr3 48789800 48790929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04110 9 247 AP2-EREBP Transcription Factor Family AT4G17500 56.827 2.04e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g04110 AP2 9.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04110 K09286 - gmx:100803653 357.451