Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04102 ATGTCATCATGCTCTCCAAGAGAGTTAGAGACTAAATTGTCACAATCAAGTACGGATTTGATTGCAAGAGGAGGACAGGATGGTGGAAATACAATATCATGCTCTGAAAGAGCAGTGGAAGCTGAAACAGTGGACGTTGCTGTGAATTTGAGTGCAAGTCATGGACAAGGTGAAACCATACCATTAGGCACTCCAATAGCAATGGAAGCTAAAATGATTGTCTCAGACGAGGATTTTAATGCTGGAAACACCACATTAAGCGCCCCAAGTGCAATGGAAACTGTGAATGTTGAGACAAGTGGAGGGTTGAATACAAGACATGGACAGGGTTGTGAACAAGATGAAACCATAAAATTAGGCACTCCAAATGAAATCGAGACGAAAATGATAGTCTTAAGTGAGGATTTGACTGTTGGAAAGACCTCATTAAGCACTCCAAGAGCAATAGAGATTGTAACTGTTGAGTCAAGTGTGGACATGATTGCTGGAAAGACAACCTCATGCACCACTCCGAGAGCAGTGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAGTTGCAGAACAAAATCAGGATCATGGACAAGGCAACGAGACAAAATTCAGCATTTCAAAGGAAAAAGAGACAGAAACAGTGGTCTTAAGGGCTGATTTGATGGCAACGCTTAAGCCAATCTTTGGAGAAGCTGGAAACAGAACATCAGGCACTCCAATAGCAATGGAAGCTAAAATGATTGTCTCAGACGAGGATTTTAATGCTGGAAACACCACATTAAGCGCCCCAAGTGCAATGGAAACTGTGAATGTTGAGACAAGTGGAGGGTTGAATACAAGACATGGACAGGGTTGTGAACAAGATGAAACCATAAAATTAGGCACTCCAAATGAAATCGAGACGAAAATGATAGTCTTAAGTGAGGATTTGACTGTTGGAAAGACCTCATTAAGCACTCCAAGAGCAATAGAGATTGTAACTGTTGAGTCAAGTGTGGACATGATTGCTGGAAAGACAACCTCATGCACCACTCCGAGAGCAGTGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAGTTGCAGAACAAAATCAGGATCATGGACAAGGCAACGAGACAAAATTCAGCATTTCAAAGGAAAAAGAGACAGAAACAGTGGTCTTAAGGGCTGATTTGATGGCAACGCTTAAGCCAATCTTTGGAGAAGCTGGAAACAGAACATCAGGCACTCCAATAGCAATGGAAGCTAAAATGATTGTCTCAGACGAGGATTTTAATGCTGGAAACACCACATTAAGCGCTCCAAGTGCAATGGAAACTGTGAATGTTGAGTCAAGTGGAGGGTTGAATACAAGACATGGACAGGGTTGTGAACAAGATGAAACCATAAAATTAGGCACTCCAAATGAAATCGAGACCAAAATGATAGTCTTAAGTGAGGATTTGACTGTTGGAAAGACCTCATTAAGCACTCCAAGAGCAATAGAGATTGTAACTGTTGAGTCAAGTGTGGACATGATTGCTGGAAAGACAACCTCATGCACCACTCCGAGAGCAGTGGAGTTGGAATTGGTGGATGCAGGTGGAGATTCAGTTGCAGAACAAAATCAGGATCATGGACAAGGCAACGAGACAAAATTCAGCATTTCAAAGGAAAAAGAGACGGAAACAGTGGTCTTTGGGGCTGATTTGATGGCAACGCTTAAGCCAATCTTTGGAGAAGCTGGAAACAGAACATCAGGCACTCCAATAGCAATGGAAGCTAAAATGATTGTCTCAGACGAGGATTTTAATGCTGGAAACACCACATTAAGCGCTCCAAGTGCAATGGAAACTGTGAATGTTGAGTCAAGTGGAGGGTTGAATACAAGACATGGACAGGGTTGTGAACAAGATGAAACCATAAAATTAGGCACTCCAAATGAAATCGAGACCAAAATGATAGTCTTAAGTGAGGATTTGACTGTTGGAAAGACCTCATTAAGCACTCCAAGAGCAATAGAGATTGTAACTGTTGAGTCAAGTGTGGACATGATTGCTGGAAAGACAACCTCATGCACCACTCCGAGAGCAGTGGAGTTGGAATTGGTGGATGCAGGTGGAGATTCAGTTGCAGAACAAAATCAGGATCATGGACAAGGCAACGAGACAAAATTCAGCATTTCAAAGGAAAAAGAGACGGAAACAGTGGTCTTTGGGGCTGATTTGATGGCAACGCTTAAGCCAATCTTTGGAGAAGCTGGAAACAGAACATCAGGCACTCCAAGAGCAGTGAAGAATGAAATGGTTGAGACAAACATGGAGTCAATTACTAGATGCAAAAGGGTTTGTGAACGAGCTGGAATAGAAAAAGGTCCATCATCACCTGAAGGAAAAGCTACAGACAAGAAAAGAGATTCACCTTTTCCTGAAAGAGCAAGGTCATCTAAACGAGGTGGTAGAAGAGGCATGCAGGGTACGTGGAACCAACCTACTCAGAAGAGGGCAAGAATAGGAGAAAAAAACAAGGAAATTTGTGATCCTGGACCAACCTCAATAATGGAAGAAGGTCCGTTATCATCACCTGAAAGACAAGCAGCAAACAACAAAAGAGGTTCGCGTTTGCTTGAAAGAGTTAGGTCATGTAAACGAGGCACGAAAAGGGGCATGCAGGGTACGTCAAGCCAGCCTACTCGGAAGAGGGTGAGAATAGTAGAACAAAACAAAGAAGTTAATAATCCTGGACCAAGCTCAATAATGGAAAATAGTCCATCATCACTTAAAAGACAAACAGCAAACAAGAGAAGAGATTCACCTTCATCTGATAGAGTAAGGTCATGTAAGAAAACCACTTTTCTATGGTTGATAGACTCTAAGATTATTAAGGAAGATGAACCAGTAAGCTATAGGAGTGCTACAATTAAAAAGGCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAGAACCATGCTGGAAGTACTCTTAAACAGCCCTATAAACATATTTACATTCACAGAAAACGCCAAACCCTCCGAAAATGCTTGATTGATGTTTGGCAACATGCCCGGGAACAAAAGCGTCGCGGAATGCATTTGTATGTGCCGAAAGAAACTGATGCAGACCAAAATGATGATGTTTGTTCAGTCTGTGGTGATGGGGGAGACTTAATCTGTTGTGACAGGTGTCCTTCCGCATATCATCTATCTTGCATGAATATAGAGACGGTTCCCCAAAATGATTGGTTTTGTCCATATTGTGTATGCAAACACTGTGGGCTGGTTGTGGACCTGGTTGTCGAGAAAAAAGATACTATGAGAAAAAAGAAGGCTTCAAGTGCTCCCAATGTGATAAAAAGTATCATTGGGAGTGCTTTGAAAAATATGAAAAAGAATCCTCAAAACAAATTAAACCTTCAAGATCATATTGTGGGCGAGGTTGCGAAGGGATATATGCGAAAATGGGAGTATATCTTGGAATCAGAAATGATTATTCAGCAAAATACTCTTGGAGGGTTATCCGCCTCATGGAGACATACAAGAATTCGGCATATATGA 3570 0.421 MSSCSPRELETKLSQSSTDLIARGGQDGGNTISCSERAVEAETVDVAVNLSASHGQGETIPLGTPIAMEAKMIVSDEDFNAGNTTLSAPSAMETVNVETSGGLNTRHGQGCEQDETIKLGTPNEIETKMIVLSEDLTVGKTSLSTPRAIEIVTVESSVDMIAGKTTSCTTPRAVEMELVDAGGDSVAEQNQDHGQGNETKFSISKEKETETVVLRADLMATLKPIFGEAGNRTSGTPIAMEAKMIVSDEDFNAGNTTLSAPSAMETVNVETSGGLNTRHGQGCEQDETIKLGTPNEIETKMIVLSEDLTVGKTSLSTPRAIEIVTVESSVDMIAGKTTSCTTPRAVEMELVDAGGDSVAEQNQDHGQGNETKFSISKEKETETVVLRADLMATLKPIFGEAGNRTSGTPIAMEAKMIVSDEDFNAGNTTLSAPSAMETVNVESSGGLNTRHGQGCEQDETIKLGTPNEIETKMIVLSEDLTVGKTSLSTPRAIEIVTVESSVDMIAGKTTSCTTPRAVELELVDAGGDSVAEQNQDHGQGNETKFSISKEKETETVVFGADLMATLKPIFGEAGNRTSGTPIAMEAKMIVSDEDFNAGNTTLSAPSAMETVNVESSGGLNTRHGQGCEQDETIKLGTPNEIETKMIVLSEDLTVGKTSLSTPRAIEIVTVESSVDMIAGKTTSCTTPRAVELELVDAGGDSVAEQNQDHGQGNETKFSISKEKETETVVFGADLMATLKPIFGEAGNRTSGTPRAVKNEMVETNMESITRCKRVCERAGIEKGPSSPEGKATDKKRDSPFPERARSSKRGGRRGMQGTWNQPTQKRARIGEKNKEICDPGPTSIMEEGPLSSPERQAANNKRGSRLLERVRSCKRGTKRGMQGTSSQPTRKRVRIVEQNKEVNNPGPSSIMENSPSSLKRQTANKRRDSPSSDRVRSCKKTTFLWLIDSKIIKEDEPVSYRSATIKKALAGRITRGGILCSCCQEEISMWTFENHAGSTLKQPYKHIYIHRKRQTLRKCLIDVWQHAREQKRRGMHLYVPKETDADQNDDVCSVCGDGGDLICCDRCPSAYHLSCMNIETVPQNDWFCPYCVCKHCGLVVDLVVEKKDTMRKKKASSAPNVIKSIIGSALKNMKKNPQNKLNLQDHIVGEVAKGYMRKWEYILESEMIIQQNTLGGLSASWRHTRIRHI 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04102 1189 MobiDBLite consensus disorder prediction 878 892 - -
Viun3g04102 1189 SUPERFAMILY FYVE/PHD zinc finger 1041 1097 IPR011011 -
Viun3g04102 1189 MobiDBLite consensus disorder prediction 778 935 - -
Viun3g04102 1189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1039 1136 IPR013083 -
Viun3g04102 1189 MobiDBLite consensus disorder prediction 861 875 - -
Viun3g04102 1189 MobiDBLite consensus disorder prediction 921 935 - -
Viun3g04102 1189 MobiDBLite consensus disorder prediction 901 920 - -
Viun3g04102 1189 Pfam PHD-finger 1051 1093 IPR019787 -
Viun3g04102 1189 MobiDBLite consensus disorder prediction 787 809 - -
Viun3g04102 1189 SMART PHD_3 1051 1092 IPR001965 -
Viun3g04102 1189 PANTHER PHD FINGER PROTEIN 12 848 1098 IPR042163 GO:0003714|GO:0045892
Viun3g04102 1189 ProSitePatterns Zinc finger PHD-type signature. 1052 1091 IPR019786 -
Viun3g04102 1189 ProSiteProfiles Zinc finger PHD-type profile. 1049 1094 IPR019787 -
Viun3g04102 1189 Pfam Tify domain binding domain 971 1021 IPR032308 -
Viun3g04102 1189 CDD PHD2_CHD_II 1051 1091 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04102 Viun-Chr3 48731298 48740463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04102 939 1105 PHD Transcription Factor Family AT4G14920 42.604 1.94e-37 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun3g04102 TDBD 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04102 - - vun:114177457 2339.69