Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04093 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACGAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCTGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGCTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAAAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAACAGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTCGTTCCAGATTATAATCAAGGACACCTAAAGGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTTTCTAATTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTTCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACGAGAGACCTGTGTACTATTCTTCACGAACAACAGTCTTATTTCTCTGCATCTTCTGAGGAGGATCTTCTTTTGGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCCCGTGATGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAATAAACAGTGCCTAATGAATGAAGCATATTCATTCTCTAGTACGATTCCTTTGTATAGTAGTGACCACAGTGGCATGAACTTCTCATCTTATGGAATTGAAAAGATCAAAAACTCAGCTGGTCAAATCGTGCAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACAAGTTCCTGGAAATCACAATTCACTGTTGTGCTCAATAGATTTAAATGATGTGGTGAACTATGAGGAGTTTATGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTAAAGTATCTTCCTGTGGTTGATACCTCTAATTTTACTGATAGCCTTAAAAACATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGACAAAACCTGAAGAATGGAAGACCTTGAAAAGGCTTGTGTTATCTAATATGTCAAAATCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAAACTATTGGTCCGGGATCTACTGCTATGGAATCAAGTAATGTTATAAACACCAAGAGAATGCGTGAGCATGACAGCCAAAATCAAAATTTTGCAGAAATTTCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGAACATAAATCCTACACGTGAAGGCAAAGAAGTTGTAGAAGAAGGCTCAAGCTTCAGCCCGAAAAGCCTTTTTTCTTTGCCCCATGGTGTTGGGGGCTTGCACATGTTGGATTCTTTTAACTATGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCGCAGGCAGAGCTTCTACTCCCAACTTTAAGCTATGGTGCAAAGGTCTGCACCACTAGTAGCTCACTACACTCAACTGTTACTCATCATCCTTAA 1641 0.4162 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENADYEDQKVSRVKSISLNKNKEVKLVNRKQNYDNAASGGFVPDYNQGHLKVVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLLESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPLYSSDHSGMNFSSYGIEKIKNSAGQIVQQEKLERDKSQLEKQVPGNHNSLLCSIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDTSNFTDSLKNMFSSFQFKENLTYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNMSKSKWVEHYNFLKKCENKAGKTIGPGSTAMESSNVINTKRMREHDSQNQNFAEISELKTTMRSPKRVNINPTREGKEVVEEGSSFSPKSLFSLPHGVGGLHMLDSFNYVGESSEDLLLDVPSNSSFPQAELLLPTLSYGAKVCTTSSSLHSTVTHHP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04093 546 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Viun3g04093 546 MobiDBLite consensus disorder prediction 107 132 - -
Viun3g04093 546 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Viun3g04093 546 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Viun3g04093 546 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Viun3g04093 546 MobiDBLite consensus disorder prediction 109 132 - -
Viun3g04093 546 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Viun3g04093 546 Gene3D - 287 390 IPR038108 -
Viun3g04093 546 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Viun3g04093 546 PANTHER OSJNBB0038F03.10 PROTEIN 1 524 IPR044589 -
Viun3g04093 546 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Viun3g04093 546 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Viun3g04093 546 Pfam Asx homology domain 281 375 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04093 Viun-Chr3 48610153 48615955 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04093 1 521 C2C2-Gata Transcription Factor Family AT4G17570 52.052 8.53e-151 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun3g04093 ASXH 6.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04093 - - vum:124834311 996.497