Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04092 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACGAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCTGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTGCATGCACGGGCAGAAAATGCTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAAAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAACAGAAAGCAGAACTATGATAATGCTGCATCTGGAGGGTTCGTTCCAGATTATAATCAAGGACACCTAAAGGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTTTCTAATTCGGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTTCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACGAGAGACCTGTGTACTATTCTTCACGAACAACAGTCTTATTTCTCTGCATCTTCTGAGGAGGATCTTCTTTTGGAAAGTGACACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCCCGTGATGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAATAAACAGTGCCTAATGAATGAAGCATATTCATTCTCTAGTACGATTCCTTTGTATAGTAGTGACCACAGTGGCATGAACTTCTCATCTTATGGAATTGAAAAGATCAAAAACTCAGCTGGTCAAATCGTGCAACAAGAGAAACTTGAAAGGGACAAGTCTCAGCTTGAAAAACAAGTTCCTGGAAATCACAATTCACTGTTGTGCTCAATAGATTTAAATGATGTGGTGAACTATGAGGAGTTTATGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTAAAGTATCTTCCTGTGGTTGATACCTCTAATTTTACTGATAGCCTTAAAAACATGTTCAGTAGCTTCCAATTCAAGGAGAACTTGACTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGACATCTCTTTGTTGGGGACAAAACCTGAAGAATGGAAGACCTTGAAAAGGCTTGTGTTATCTAATATGTCAAAATCAAAATGGGTAGAACACTATAATTTTCTCAAGAAATGTGAAAACAAAGCTGGAAAAACTATTGGTCCGGGATCTACTGCTATGGAATCAAGTAATGTTATAAACACCAAGAGAATGCGTGAGCATGACAGCCAAAATCAAAATTTTGCAGAATTGAAGACAACAATGAGGAGCCCCAAAAGGGTGAACATAAATCCTACACGTGAAGGCAAAGAAGTTGTAGAAGAAGGCTCAAGCTTCAGCCCGAAAAGCCTTTTTTCTTTGCCCCATGGTGTTGGGGGCTTGCACATGTTGGATTCTTTTAACTATGTTGGTGAGAGTTCTGAGGATCTGCTGTTAGATGTGCCTTCTAACAGTTCTTTTCCGCAGGCAGAGCTTCTACTCCCAACTTTAAGCTATGGTGCAAAGGTCTGCACCACTAGTAGCTCACTACACTCAACTGTTACTCATCATCCTTAA 1632 0.4173 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENADYEDQKVSRVKSISLNKNKEVKLVNRKQNYDNAASGGFVPDYNQGHLKVVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCSGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLLESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPLYSSDHSGMNFSSYGIEKIKNSAGQIVQQEKLERDKSQLEKQVPGNHNSLLCSIDLNDVVNYEEFMRNLTNEEQQQLLKYLPVVDTSNFTDSLKNMFSSFQFKENLTYFQQLLGEGVFDISLLGTKPEEWKTLKRLVLSNMSKSKWVEHYNFLKKCENKAGKTIGPGSTAMESSNVINTKRMREHDSQNQNFAELKTTMRSPKRVNINPTREGKEVVEEGSSFSPKSLFSLPHGVGGLHMLDSFNYVGESSEDLLLDVPSNSSFPQAELLLPTLSYGAKVCTTSSSLHSTVTHHP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04092 543 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Viun3g04092 543 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Viun3g04092 543 MobiDBLite consensus disorder prediction 107 132 - -
Viun3g04092 543 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Viun3g04092 543 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Viun3g04092 543 Pfam Asx homology domain 281 375 IPR028020 -
Viun3g04092 543 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Viun3g04092 543 Gene3D - 287 391 IPR038108 -
Viun3g04092 543 MobiDBLite consensus disorder prediction 109 132 - -
Viun3g04092 543 PANTHER OSJNBB0038F03.10 PROTEIN 1 521 IPR044589 -
Viun3g04092 543 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Viun3g04092 543 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Viun3g04092 543 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04092 Viun-Chr3 48610153 48615957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04092 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.158 2.28e-151 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun3g04092 ASXH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04092 - - vum:124834311 1001.89