Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04091 ATGTCAAAGTATTATTTTCCCATAAAATATATCCAAAATGGCTTAAACCATAGATTTTTCCATTCAAAATCAGTAACAGTAGTACACAGAAACCCAAACTATTCAAGAGTGGCAGGGGTCTCTGGGCTATGGAGGAATGGAGCTGGTTGTGGCACGTGTTATCAGGTAAAGTGCAAAATAACAGAAGTGTGCGATGTGAATGGAGCATTCCTGGTTGCTACGGACCAGGGTTATGGAGACAGAACGGACTTCATCATGAGCCCACAGGCGTTCTCAAGACTGGGACGCAATCAAAATGCATCTGCAGAGCTTAAGAAATACGGTACAGTGGAGATTGAATACAGAAGGGTTCCATGTACGTTCATCGGCAACGTCTTGTTTCACATCAAGGAAAGTAGCAGCAACCCTGGTTACTTGGCTGTTGCGATTCTGAATGTAAACGGAAAATACGACGTCAATGCTGTTGAAATGTGGCAGAAAGGGCAACAACGATGGGAACCCCTGCGCAGAGTGTATGGGGCAGTGTTTGACTTTGCTAACCCACCGAGAGGTTCAATTCTTCTGAGGTTTCAAGTGGGCGTTAATTGGATGATACCAAACATCCCTATCCCTGCGAATTGGAGGCCTGGGGCAACTTATGACACCAAACTTCAGCTTTACTAG 663 0.4495 MSKYYFPIKYIQNGLNHRFFHSKSVTVVHRNPNYSRVAGVSGLWRNGAGCGTCYQVKCKITEVCDVNGAFLVATDQGYGDRTDFIMSPQAFSRLGRNQNASAELKKYGTVEIEYRRVPCTFIGNVLFHIKESSSNPGYLAVAILNVNGKYDVNAVEMWQKGQQRWEPLRRVYGAVFDFANPPRGSILLRFQVGVNWMIPNIPIPANWRPGATYDTKLQLY 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04091 220 Gene3D - 123 220 IPR036749 -
Viun3g04091 220 Gene3D - 23 120 IPR036908 -
Viun3g04091 220 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 137 215 IPR007117 -
Viun3g04091 220 PANTHER EXPANSIN-B3 30 218 - -
Viun3g04091 220 Pfam Lytic transglycolase 37 111 IPR009009 -
Viun3g04091 220 SUPERFAMILY Barwin-like endoglucanases 33 124 IPR036908 -
Viun3g04091 220 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 124 IPR007112 -
Viun3g04091 220 SUPERFAMILY PHL pollen allergen 124 214 IPR036749 -
Viun3g04091 220 PRINTS Expansin/Lol pI family signature 107 123 IPR007118 GO:0005576
Viun3g04091 220 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Viun3g04091 220 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Viun3g04091 220 Pfam Expansin C-terminal domain 126 198 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04091 Viun-Chr3 48598821 48599676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04091 30 219 Expansin Gene Family AT4G17030 48.469 3.79e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04091 - - gmx:100778424 310.842