Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04046 ATGGCTCTTTCTCTTTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCCTTCCTTCAATCTCGTGCAGCATATTACCCAAACTCTGCAGAAAATGGCACAGATGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACTGTTAATGGTGGGGATGTATCAGCTGCTTCTGATCTTTATCGAAATGGTGTTGGCTGCGGTGCCTGTTACCAGGTGAGATGTAGCAATAGTGCTTATTGCTCAGGAAATGGTGTGACGATAGTAATAACTGACCAAGGTTCTAGTGCTAACACTGATTTCATTCTTAGCCAACGAGCTTTTGGTGGGATGGCTATCAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGCATAGTTGATATTGAATATAGAAGGGTTTCATGCAGCTACCCAGGCAAAAACATTACAGTTAAGATACATCAGAGTAGCAACAACCCTCACTATTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGTAGAGACATAACTGCTGTGCAACTTTGTGAGACTGAGAACTTTGTGTGCAAGTTACTGGATCGGAGTCATGGGGCAGTATGGACCACCACCGCGCCACCAAGTGGACCTTTGGCTTTGAGGATGTTGTTTAGTGATGAAGAAGAGGGAGACGAATCATGGGTCGTTCCGGTTAATAACATTCCACAAGACTGGAAGGCCGAAGAAACCTACGACTTAGGTGTACAAGTGAACCAATAG 753 0.4436 MALSLLCPLLATFLFMQTLADTSFLQSRAAYYPNSAENGTDVGACGFGSFGATVNGGDVSAASDLYRNGVGCGACYQVRCSNSAYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGIVDIEYRRVSCSYPGKNITVKIHQSSNNPHYLAFVLWFQQGSRDITAVQLCETENFVCKLLDRSHGAVWTTTAPPSGPLALRMLFSDEEEGDESWVVPVNNIPQDWKAEETYDLGVQVNQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04046 250 Gene3D - 143 248 IPR036749 -
Viun3g04046 250 SUPERFAMILY PHL pollen allergen 146 243 IPR036749 -
Viun3g04046 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Viun3g04046 250 Pfam Expansin C-terminal domain 148 220 IPR007117 -
Viun3g04046 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Viun3g04046 250 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Viun3g04046 250 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Viun3g04046 250 CDD DPBB_EXLB_N 26 141 - -
Viun3g04046 250 PANTHER EXPANSIN-B3 14 247 - -
Viun3g04046 250 Pfam Lytic transglycolase 63 136 IPR009009 -
Viun3g04046 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Viun3g04046 250 Gene3D - 11 142 IPR036908 -
Viun3g04046 250 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04046 Viun-Chr3 48080000 48081520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04046 2 243 Expansin Gene Family AT4G17030 41.152 6.14e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04046 - - gmx:100812555 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02306 2 30405652 30407223 Viun3g04046 3 48080000 48081520 PCT