Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04037 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGGAGACAGCATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCTTTGTCAGCAATCTCAAGTACACCTCAAAACTTCCACATTGCCATAGTAGAGGTGAGTTCAAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAATAATTATGACTTCTAACAACCATTGCCTGAACATCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTCTAGTGACTATGTTGCAGCTCCCAACAGACAATGAACAAGATGAAAATAAAGTATCCATTGATATAGATGAGGCAGCCAGGTTTACTGATTATGATCATGTACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGACCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACTTGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGATATGACTTTGGCTAGGGAGGAAGTGGATTTAGTTGATGCTTCCAAGGGTGAGAGTATTGCCTCTCTACATACACAAAAAAGAAAGGTTCTAAGCAACCCTGACAAAAATACCAAATCTGCAAATATAGTAGGCGTTGTTAGTGATTCATGTGAGATAAAGCCAAGGCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCTAGAATATTAGAGATAATGAAAGTGGAGGGTTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCATAGGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGCTGAATCAAAGAGAAAGGATCTATTGTGTTCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCAAACCCTTCCTATGGCTCCTATATATCCTATGTGGGGACAATCTAGCACTCAAACAGCTGGCATGCATATTTGGAGCTCTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAACATTGGCACTGGAAACCGATTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTTTCCCTACACTAAGAACATGCCTGCGTTGCTCAATGCGGATGCAACAGGTCAGACGTTTACGATGCCACAAAGTTCCTTAGAGCATTATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAAGAGGCAGTAAGCAAACCATGGCTACCATTGCCTTTGGGACTGAAACCCCCTTCCACAGACAGTGTGTTGGCTGAGTTATCAAGACAAGGCATTTGCAGCATTCCTCCTAGGAGCAGCAAGGGTTCAAATTGA 1671 0.4327 MVFTANDLQEWKDFPKGLKVLLLEGDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSTPQNFHIAIVEVSSSSSQGGFKFLENAKDLPIIMTSNNHCLNIMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESLVTMLQLPTDNEQDENKVSIDIDEAARFTDYDHVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQDQTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQERKSDMTLAREEVDLVDASKGESIASLHTQKRKVLSNPDKNTKSANIVGVVSDSCEIKPRRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHRRQIFPKEEDRKWLNQRERIYCVQRPIMAFPPYHSNQTLPMAPIYPMWGQSSTQTAGMHIWSSPGYPLWQPTAEHWHWKPIPGMHADAWGCPVLPVPPPQAPFPYTKNMPALLNADATGQTFTMPQSSLEHYPAEEVVDKVVKEAVSKPWLPLPLGLKPPSTDSVLAELSRQGICSIPPRSSKGSN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04037 556 NCBIfam myb-like DNA-binding domain, SHAQKYF class 316 370 IPR006447 GO:0003677
Viun3g04037 556 SMART REC_2 18 128 IPR001789 GO:0000160
Viun3g04037 556 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 550 IPR044825 GO:0003700|GO:0045893
Viun3g04037 556 Gene3D - 313 374 - -
Viun3g04037 556 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Viun3g04037 556 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Viun3g04037 556 Gene3D - 18 139 - -
Viun3g04037 556 FunFam Two-component response regulator 312 374 - -
Viun3g04037 556 FunFam Two-component response regulator-like APRR2 17 143 - -
Viun3g04037 556 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Viun3g04037 556 SUPERFAMILY CheY-like 16 134 IPR011006 -
Viun3g04037 556 MobiDBLite consensus disorder prediction 187 259 - -
Viun3g04037 556 SUPERFAMILY Homeodomain-like 315 373 IPR009057 -
Viun3g04037 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04037 Viun-Chr3 48011144 48016901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04037 1 551 Response Regulator Gene Family AT4G18020 48.021 2.44e-138 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun3g04037 Response_reg 3.6e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04037 - - gmx:100777535 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02282 2 30364776 30370617 Viun3g04037 3 48011144 48016901 PCT