Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04036 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGGAGACAGCATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCTTTGTCAGCAATCTCAAGTACACCTCAAAACTTCCACATTGCCATAGTAGAGGTGAGTTCAAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAATAATTATGACTTCTAACAACCATTGCCTGAACATCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTCTAGTGACTATGTTGCAGCTCCCAACAGACAATGAACAAGATGAAAATAAAGTATCCATTGATATAGATGAGGCAGCCAGGTTTACTGATTATGATCATGTACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGACCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACTTGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGATATGACTTTGGCTAGGGAGGAAGTGGATTTAGTTGATGCTTCCAAGGGTGAGAGTATTGCCTCTCTACATACACAAAAAAGAAAGGTTCTAAGCAACCCTGACAAAAATACCAAATCTGCAAATATAGTAGGCGTTGTTAGTGATTCATGTGAGATAAAGCCAAGGCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCTAGAATATTAGAGATAATGAAAGTGGAGGGTTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCATAGGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGCTGAATCAAAGAGAAAGGATCTATTGTGTTCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCAAACCCTTCCTATGGCTCCTATATATCCTATGTGGGGACAATCTAGCACTCAAACAGCTGGCATGCATATTTGGAGCTCTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAACATTGGCACTGGAAACCGATTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCTCCTCAAGCTCCTTTTCCCTACACTAAGAACATGCCTGCGTTGCTCAATGCGGATGCAACAGGTCAGACGTTTACGATGCCACAAAGTTCCTTAGAGCATTATCCGTGTTACGATGCATGCATGCAGGCAGAGGAGGTTGTTGACAAGGTTGTGAAAGAGGCAGTAAGCAAACCATGGCTACCATTGCCTTTGGGACTGAAACCCCCTTCCACAGACAGTGTGTTGGCTGAGTTATCAAGACAAGGCATTTGCAGCATTCCTCCTAGGAGCAGCAAGGGTTCAAATTGA 1692 0.4332 MVFTANDLQEWKDFPKGLKVLLLEGDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSTPQNFHIAIVEVSSSSSQGGFKFLENAKDLPIIMTSNNHCLNIMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSSGTSILCESLKPVKESLVTMLQLPTDNEQDENKVSIDIDEAARFTDYDHVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQDQTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQERKSDMTLAREEVDLVDASKGESIASLHTQKRKVLSNPDKNTKSANIVGVVSDSCEIKPRRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHRRQIFPKEEDRKWLNQRERIYCVQRPIMAFPPYHSNQTLPMAPIYPMWGQSSTQTAGMHIWSSPGYPLWQPTAEHWHWKPIPGMHADAWGCPVLPVPPPQAPFPYTKNMPALLNADATGQTFTMPQSSLEHYPCYDACMQAEEVVDKVVKEAVSKPWLPLPLGLKPPSTDSVLAELSRQGICSIPPRSSKGSN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04036 563 SMART REC_2 18 128 IPR001789 GO:0000160
Viun3g04036 563 FunFam Two-component response regulator 312 374 - -
Viun3g04036 563 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Viun3g04036 563 Gene3D - 313 374 - -
Viun3g04036 563 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Viun3g04036 563 NCBIfam myb-like DNA-binding domain, SHAQKYF class 316 370 IPR006447 GO:0003677
Viun3g04036 563 Gene3D - 18 139 - -
Viun3g04036 563 FunFam Two-component response regulator-like APRR2 17 143 - -
Viun3g04036 563 MobiDBLite consensus disorder prediction 187 259 - -
Viun3g04036 563 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Viun3g04036 563 SUPERFAMILY CheY-like 16 134 IPR011006 -
Viun3g04036 563 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 557 IPR044825 GO:0003700|GO:0045893
Viun3g04036 563 SUPERFAMILY Homeodomain-like 315 373 IPR009057 -
Viun3g04036 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04036 Viun-Chr3 48011144 48016904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04036 1 558 Response Regulator Gene Family AT4G18020 47.856 2.26e-139 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun3g04036 Response_reg 3.7e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04036 - - gmx:100777535 904.049