Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04026 ATGGGAGGGGCAACACTGCCACCAGGATTTCGTTTCCATCCAACTGATGAGGAACTAGTGGGATACTACCTTAAAAGAAAAGTAGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCTGTGATCGATTTTTACAAATTCGATCCCTGGGAATTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATATGGAATGGTTTTTCTTTTGTCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACTAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAGGTGGTGTGCCAGTCTAATCCATCCAATGTTACAGGGTACCGCAAGACCTTGGTTTTCTATGCTGGGAGGGCCCCTTTAGGAGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGCCAACCCACACCATCTTTCCAGGGTGGTTTTGCCTTGTGCCGGGTTATTAAGAAGAATGAGAAAGCAAGTGCTACGAAGGGAGAAAACAAGGGCAAAAGGGCTGGAAGCAGTTCCATTAATGGGAGTGACACCTCAGTGAGATTCTCTGGTGAGCCATTCAGCAACTCTGGTGATTCTTCCTCTCATGCAAGCCAACTGAATAATGAGAGTCGTTATTCAAGCCCAATTACTTCTCCATACAATGTGGCTCCAATGGGAGAGATTAACCAAGCTTCTCTGGAAACCAATCCTTCAAACTTCTGGATCTCCCCTGACATGATTCTTGATTCTTCAAAGGACTATCCTCAATTACAGCATGCCGTGGCTGAATATTTTCCACGGTATGACTTACCAAGTATGGGGACACAATGGCAATCAGTGGAACATTCAGAAACTCCATCTGGTTTCTCCTACTCAAATGTCAATGGAGAAGTTGAATTTGCTGATACTCTCAGTCAAATTGGCGGCATGTCACCTTACTCAAGAGAATGGAATTCCATGGACTTCTATGGAAATGGTGGAGATGTCCCTTATGAAGATTATGATCAAATTAACTCAATCTCGTATCCGTGA 1035 0.4435 MGGATLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSNVTGYRKTLVFYAGRAPLGDRTDWVMHEYRLCDDLGQPTPSFQGGFALCRVIKKNEKASATKGENKGKRAGSSSINGSDTSVRFSGEPFSNSGDSSSHASQLNNESRYSSPITSPYNVAPMGEINQASLETNPSNFWISPDMILDSSKDYPQLQHAVAEYFPRYDLPSMGTQWQSVEHSETPSGFSYSNVNGEVEFADTLSQIGGMSPYSREWNSMDFYGNGGDVPYEDYDQINSISYP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04026 344 FunFam Nac domain-containing protein 86 15 162 - -
Viun3g04026 344 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Viun3g04026 344 MobiDBLite consensus disorder prediction 163 219 - -
Viun3g04026 344 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Viun3g04026 344 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Viun3g04026 344 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Viun3g04026 344 MobiDBLite consensus disorder prediction 171 219 - -
Viun3g04026 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04026 Viun-Chr3 47848076 47850747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04026 1 300 NAC Transcription Factor Family AT4G17980 54.276 8.91e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g04026 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04026 - - gmx:100792714 626.32